Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2669 383 2e-101 seq18 242 5e-59 seq6 136 5e-27 seq22 122 1e-22 seq8 111 2e-19 seq5 111 2e-19 seq4 86.0 8e-12 >seq2669 Length=49141 Score = 383 bits (424), Expect = 2e-101 Identities = 645/926 (70%), Gaps = 12/926 (1%) Strand=Plus/Plus Query 32315 TTAAAAGTCAACATCTAGAGAAAAATGATTGTCT-TCT--TGAGACATAACTCCCATTTT 32371 ||| |||||| |||| | | |||| ||| ||| || | ||||| |||||||| | Sbjct 22083 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCGAATTCGACATGACTCCCATCCT 22142 Query 32372 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTC 32431 || || || || || || || || || || || || || ||||||| ||| |||||||| Sbjct 22143 CTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAGATATTTTC 22202 Query 32432 CATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 32491 |||| | || || ||||| || | |||| || ||||| |||| || || | Sbjct 22203 CATGCAGTCAAACGGATTTTCTACTCTGAAAATCTTGTTAAAACCCAGCTCCAGCATAAG 22262 Query 32492 TCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 32551 || || || ||||| || ||||| ||||||| ||||||||||| || || || Sbjct 22263 CCTGTCGGCCACAAACTCAATATACTGCTTCATCAAAGTGCAATTCATTCCGATGAGCTT 22322 Query 32552 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGA 32611 || || | ||| | | || || || || || || || || || || || Sbjct 22323 CACGGGCAAGGCCTCCGGGAGGAACTCCTGCTCTATCCTAAC---GTTGGTGATTATCTC 22379 Query 32612 TCTTACTGTTT-CTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAAT 32670 ||| || | | || | || | | | | | | || || ||||||| || || || | Sbjct 22380 TCTGACCCTCTGCTCCGCTGGCTTG-TGTACCAGGTGCTTGAACATCAGGCAGGCAAAGT 22438 Query 32671 CGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTA 32730 | ||||||| |||||||||||||||||| | || |||||||| || || || ||||| | Sbjct 22439 CACAGTGTAAACCCTCGTCTCTACTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCA 22498 Query 32731 GGCCACGCTTT-TTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCT 32789 | || | ||| || ||||| ||||| || ||||| || || |||||||| ||||||||| Sbjct 22499 GCCCCCCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCCTTCT 22558 Query 32790 ACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACTTT 32846 || || |||||||| | || | |||||||| | | | |||| |||| Sbjct 22559 ACAGCGGCAAAGGCCACAACGCGTTCTCCATACGTAGCCTCTTTGTCCCCAGTCCAGCGC 22618 Query 32847 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAG 32906 ||||| || |||||||| || ||||||||||| || || |||||||| |||||||| Sbjct 22619 AAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATCGTTTCAATAGCATTGAAGAGATAT 22678 Query 32907 tttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGA 32966 | | |||| || |||||||| || || ||||| | |||| |||||||| || || Sbjct 22679 TCTCTTTCCTTGGGATCTTTAATGTAAGTGTCAATAAGGGGACTGTACATTTCAGAGTGT 22738 Query 32967 ATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCT 33026 |||||||| ||||| ||||| || || ||||| || | ||||| |||| || |||||| Sbjct 22739 ATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACTTGAACTTCT 22798 Query 33027 GTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCC 33086 | |||||| || | || || ||||| ||||| || ||||| |||||||| || ||| Sbjct 22799 TGGCTAAATCGCTCCACCAAGTTCTCATTGACTATGCCATCACTCGCTGCAAAGAAAGCC 22858 Query 33087 AATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCT 33146 | ||||| |||||||| | | || || ||| | || | ||| | | ||||| Sbjct 22859 AGAACATGAGATATAAAATGTCTCTCATCGGGTTTCAGAGCCTCCCAGTGCTGAATATCC 22918 Query 33147 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 33206 || || | ||||| || || | |||||||| || ||||| || || || ||||| | | Sbjct 22919 TTGGAAAGGTCCACCTCCTCGGCAGTCCAAAAGGAGGCCTCGGCTTTCTTGTACATCTGC 22978 Query 33207 CAGATGTCATGATATTGAATTGGAAA 33232 ||||| ||||| || | || ||||| Sbjct 22979 CAGATATCATGGTACTCGATGGGAAA 23004 >seq18 Length=146158383 Score = 242 bits (268), Expect = 5e-59 Identities = 413/592 (70%), Gaps = 14/592 (2%) Strand=Plus/Plus Query 32646 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 32705 || || ||||||| | | || || ||||||| |||||||||||| ||||| | || Sbjct 66703337 TGCTTGAACATCAGGTAGACAAAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGCTCA 66703396 Query 32706 TTGGAAAAC-GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA 32764 |||||||| || || || ||||| || || | || || ||||| ||||| || ||||| Sbjct 66703397 TTGGAAAAATGTAAGGCCCGGCATCAGTCCCTGTTTCTTGAGCCAGAATATCGATGCAAA 66703456 Query 32765 TGATCCAGAAAA-GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA-- 32821 || |||||||| ||| ||| ||||||| || |||||||| | || || ||| |||| Sbjct 66703457 AGAACCAGAAAAAGAAGATTGCTTCTACCGCGGCAAAGGCCACAACTCGTTCTGCATATG 66703516 Query 32822 -ACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCA 32880 | | | |||| |||| | ||||| || ||||||| |||| |||| Sbjct 66703517 TAGCTTCTTTGTCCCCAGTCCAATGCAAGGCCCAGTCAGCCTTCT------CACA-GGCA 66703569 Query 32881 TTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAA 32940 |||| || |||||||| || ||||| | | |||| || | |||||||| || || |||| Sbjct 66703570 TTGTTTCAATAGCATTGAAAAGATATTCTCTTTCTTTGCGATCTTTAATGTAAGTGTCAA 66703629 Query 32941 TCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGC 33000 | | ||||||||||||| || || ||| || ||| | |||| || || || || | Sbjct 66703630 TAAGGAGACTATACATTTTAGAGTGTATGCTTCTCATGCCAGTTTGGAAGCCATA-AAAC 66703688 Query 33001 ATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTA 33060 | | |||||| |||| || | |||| | |||||| || | || ||| |||| | || Sbjct 66703689 AGCCAGCCTCTGTAACTTGAATTTCTTGGCTAAATCGCTCCACCAAGTTTGCATTGAGTA 66703748 Query 33061 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTG 33120 | || ||||| |||||||| || |||| | || |||||||| | | || || ||| Sbjct 66703749 TGCCATCACTTGCTGCAAAGAAAGCCAGAATGTGAGCTATAAAATGTCTCTCATCGGGT- 66703807 Query 33121 TTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATG 33180 || |||| | ||||||| || || | ||||| || || | |||||||| | Sbjct 66703808 TTCACAGCTTCCCAGTGCTGATATCCTTGGAAAGGTCCACCTCCTCAGCAGTCCAAAAGG 66703867 Query 33181 ATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAA 33232 ||||| || || | ||||| | |||||| ||||| || | || ||||| Sbjct 66703868 TGGCCTCAGCTTTCCTGTACATCTGCCAGATATCATGGTACTAGATGGGAAA 66703919 >seq6 Length=112758220 Score = 136 bits (150), Expect = 5e-27 Identities = 198/281 (70%), Gaps = 19/281 (7%) Strand=Plus/Minus Query 32646 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 32705 || || ||||||| || || || || ||||||| |||||||||||| ||||| | || Sbjct 9090762 TGCTTGAACATCAGGCAGGCAAAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGCTCA 9090703 Query 32706 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 32765 ||||||| || || || ||||| || || || || || ||||| ||| | || ||||| Sbjct 9090702 TTGGAAAGTGTAAGGCCCGGCATCAGTCCCCGTTTCTTGAGCCAGAATCTTGATGCAAAA 9090643 Query 32766 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA-CC 32824 || || |||||||| ||||||||||| | |||||||| | || ||| | ||| || || Sbjct 9090642 GAACCGGAAAAGAAGATTCCTTCTACGGTGGCAAAGGCCACAACTCTTTGTCCCCAATCC 9090583 Query 32825 GGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGT 32884 |||| |||||| || ||| ||| || |||||||| || || Sbjct 9090582 AGCGC-----------------AAAGCCCAGTCAGCCGCCTTCTTCACACAAGG-ATGGT 9090541 Query 32885 CTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTT 32925 || |||||||| |||| ||| | | |||| || ||||| Sbjct 9090540 TTCAATAGCATTGAAGAAATATTCTCTTTCCTTGGGATCTT 9090500 Score = 84.2 bits (92), Expect = 3e-11 Identities = 120/167 (72%), Gaps = 3/167 (2%) Strand=Plus/Plus Query 32315 TTAAAAGTCAACATCTAGAGAAAAATGATTGTCT-TCT--TGAGACATAACTCCCATTTT 32371 ||| |||||| |||| | | |||| ||| ||| || | ||||| ||||||||| | Sbjct 9090302 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCGAATTCGACATGACTCCCATTCT 9090361 Query 32372 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTC 32431 || || || || || || || || || || || || || ||||||| ||| |||||||| Sbjct 9090362 CTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAGATATTTTC 9090421 Query 32432 CATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCA 32478 |||||| || || ||||| || | |||| || ||||| |||| Sbjct 9090422 CATGAAGTCAAACGGATTTTCTACTCTGAAAATCTTGTTAAAACCCA 9090468 >seq22 Length=147524369 Score = 122 bits (134), Expect = 1e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || |||||||| || ||||| ||||| |||||||| || ||||||||||| || || | Sbjct 105169247 ACCTGAAATTCCCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGCTCAATG 105169188 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 ||||||||||| |||| ||| || |||||||| ||||| ||||| || || | | |||| Sbjct 105169187 GACTCATTATTCCCCAGAATCTGGGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 105169128 Query 62312 CTATTTCTAAGACCGTA 62328 || ||||| | ||| || Sbjct 105169127 CTGTTTCTTATACCATA 105169111 Score = 105 bits (116), Expect = 8e-18 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | ||| |||||||||||||| | || || || ||||| || || || || | Sbjct 105151169 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCTATCCTTGCTGCCAGGA 105151110 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 ||||||| || || || | || || | || || ||| | || || ||||| ||||||| Sbjct 105151109 TGGCATAGTCAGGGTGCTTCGTGGTCAAGGTCGCGGCTGTCTCAGCAGCCAGGGTGTCCA 105151050 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||| || || || || ||| |||||| |||||||| || ||||| Sbjct 105151049 GTTCCACTGTGGTGACCCCACTATATAGGCCTTGGATTACTTTCAT 105151004 Score = 105 bits (116), Expect = 8e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 || || ||||| || | |||||||| || ||||||||||| || ||||||||||| ||| Sbjct 105156131 GTCCCGGCATTGAAGAGAGTAGGAGAGGCATGAGTAAACCACTTCTCAGAAAGTAGGTTG 105156072 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 || || ||||| || | || ||||| || ||||| || || | || | ||| ||| Sbjct 105156071 TAGGTTTCAATTGCAGCATCAATATCTTCTTTGTGAATCCCCACAGAAACCCTCATCAAC 105156012 Query 63587 ATGTGCTGAGGTCTTTCA 63604 |||||||| ||||||||| Sbjct 105156011 ATGTGCTGTGGTCTTTCA 105155994 Score = 104 bits (114), Expect = 3e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 62423 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 62482 ||||| |||| || || || || || | || || ||||| ||||| || || || | Sbjct 105166029 GATCCCTCATACGTTTCATAGGGGCCATACTCCTTGGCTAGCTCACAGCTGGCTTCCAGG 105165970 Query 62483 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCA 62542 || || || ||||||||||| ||||||| |||||||| || ||||| |||| ||| Sbjct 105165969 GCTCCATAGTAAATGGTTTCAAAGATCTGCTTATTTAATAACTGGGCTTCTGGGCTCTCA 105165910 Query 62543 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 62602 || || || | | || || || || |||||||| ||||| || ||||| || || || Sbjct 105165909 AAGGGGTATCTCATCAGGATGAAAGCATCTGCTAAACCTTGTACCCCAATTCCAATGGGC 105165850 Query 62603 CTATGTCTCTTATTAGA 62619 | ||| | ||||| || Sbjct 105165849 CGATGGCGTTTATTTGA 105165833 Score = 96.9 bits (106), Expect = 4e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| ||||| || |||||||| || |||||| || | || || || |||||||| | Sbjct 105172285 TCCAACCGTAGAAGTGCATACTAGTGAGTTTGCCGTAGTTGGGCTCAGCAATATGGATGT 105172226 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 | | ||| || || ||||||||||| || || || || || ||||| || | || |||| Sbjct 105172225 TTAAAGACTGGCTCTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTCT 105172166 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62087 | || | |||||||| | || ||||| | | |||| | || || |||| Sbjct 105172165 TCTGAGAGATTTCCCACACGGTCTTATAGAGTTGCTTCAGGTCATCAGGAA 105172115 >seq8 Length=97450195 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744 || || || || || | ||| || ||||| || ||||| ||||| ||||| | ||| || Sbjct 32799293 TCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAGGCCTCTCTTCTTT 32799352 Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 32804 ||||| ||||| | |||||||||||||| |||||||||||||| || || |||||||| Sbjct 32799353 AGCCAGAATATTGCAGCAAATGATCCAGAGAAGAAAATTCCTTCCACAGCAGCAAAGGCC 32799412 Query 32805 ATAAGTCTCTCTCC 32818 | | |||||| || Sbjct 32799413 ACCACTCTCTCCCC 32799426 >seq5 Length=114734182 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||||||||| ||||| | || |||||||| || || || ||||| || || || || | Sbjct 21262837 CCTCGTCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGCCCCCGTTTCT 21262778 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| ||||| || ||||| || || |||||||| ||||||||||| || ||||||| Sbjct 21262777 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACGGCGGCAAAGG 21262718 Query 32803 C 32803 | Sbjct 21262717 C 21262717 >seq4 Length=117747451 Score = 86.0 bits (94), Expect = 8e-12 Identities = 184/271 (68%), Gaps = 12/271 (4%) Strand=Plus/Plus Query 164715 TTTGCCAACACAGAGGGTGGATATTTGTTCATTGGATTGGATAATATTACACACAAAGTA 164774 ||||| ||||| || || ||||||||||||||||| |||||| | | || ||| | Sbjct 78484092 TTTGCAAACACTGAAGGGGGATATTTGTTCATTGGCTTGGATGGCAAAAACCAGAAAATT 78484151 Query 164775 ATTGGATTCACGGTG-GGTCAAGACTG-CCTCAAACTGATAGAGAATGAGATAGAAAAGC 164832 ||||| || | || | |||| || |||| || |||||| ||| ||||||||| Sbjct 78484152 ATTGGTTT--TGATGCAGAGAAGAGTGATCTCATGCTTCTAGAGAGTGAAATAGAAAAGT 78484209 Query 164833 GTATCAGACGACTTCATGTTGTACATTTCTGTGAGAAAAAAGAGGATATCAAATACGCAT 164892 | ||| | | || | ||| || ||||||| | | || ||| | || |||||| ||| Sbjct 78484210 GCATCCAAGGGCTGCCTGTCACTCACTTCTGTGGGGAGAAGGAGAAGATAAAATACACAT 78484269 Query 164893 GTAGATTCATCAAGGTATATAAACCTGGGGAGGAGACTACCTCGACATACGTGTGCGCTA 164952 | | |||||| | || | ||| | || | || | |||| ||||| | Sbjct 78484270 GCAAGTTCATCGAAGTGCACAAATCCGGAG------CT--GTGTGCATATGTGTGTGTGC 78484321 Query 164953 TCAAAGTGGAAAGATGTTGCTGTGCTGTGTT 164983 ||| |||||| |||| |||||||| ||||| Sbjct 78484322 TCAGAGTGGAGAGATTCTGCTGTGCAGTGTT 78484352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633606955695200