Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq25 114 1e-20 seq14 107 2e-18 seq4 98.7 9e-16 >seq25 Length=158037523 Score = 114 bits (126), Expect = 1e-20 Identities = 169/238 (71%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||||| || ||||||| | || |||||| | | Sbjct 45424653 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 45424594 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||| | ||||| || ||| || ||||| || || || |||||||| Sbjct 45424593 GACACCATCGCGAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGACCAG 45424534 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || ||||||||| |||||| | |||||||| Sbjct 45424533 CAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACTCTCTCTGATTACAAC 45424474 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATT-ATTAT 25235 || || ||||| || || || || | || || | || || || || ||| ||||| Sbjct 45424473 ATCCAGAAAGAGTCGACCCTGCACCTGGTCCTCCGTCTGAGGGGTGGCTATTAATTAT 45424416 >seq14 Length=171410997 Score = 107 bits (118), Expect = 2e-18 Identities = 168/239 (70%), Gaps = 1/239 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| ||||||| || ||||||| | || |||||| | Sbjct 144150575 AATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAGCCCAG 144150516 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| || || ||||| || ||| || ||||| || || || |||||||| Sbjct 144150515 TGACACCATTGAAAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGACCA 144150456 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||||||||| || ||||||||| |||||| | |||||||| Sbjct 144150455 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACTCTCTCTGATTACAA 144150396 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATT-ATTAT 25235 || || ||||| || || || || | || || | || || || || ||| ||||| Sbjct 144150395 CATCCAGAAAGAGTCGACCCTGCACCTGGTCCTCCGTCTGAGGGGTGGCTATTAATTAT 144150337 >seq4 Length=117747451 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || |||||||| ||| || || ||||||| | || || ||| | | Sbjct 57051385 ATGCAGATCTTCGTAAAGACCCTGATGGGCAAGACCATCACTCTTGAGGTCGAGCCCAGT 57051326 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| ||||| || ||||||||||| Sbjct 57051325 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGACCAG 57051266 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || || || |||||||| | || |||| ||||| || ||| ||||| Sbjct 57051265 CAGAGGCTGATATTAGCGGGCAAACAGCTGGAGGATGGCCGCACCCTGTCCGACTACAAC 57051206 Query 25179 ATTCAAAAAGAATCCAC 25195 || || ||||| ||||| Sbjct 57051205 ATCCAGAAAGAGTCCAC 57051189 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| ||||||| || ||||||| | || |||||| | Sbjct 57378722 AATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAGCCCAG 57378781 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| ||||| ||||| || ||| || ||||| || || || |||||||| Sbjct 57378782 TGACACCATCGAAAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGACCA 57378841 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||||||||| || | ||||||| ||||| | |||||||| Sbjct 57378842 NCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGATTACAA 57378901 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 || || || || || || || || Sbjct 57378902 CATCCAGAAGGAGTCAACCCTGCA 57378925 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || ||||||| | || || ||| | | Sbjct 92566865 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTAGAGCCCAGT 92566806 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| ||||| | ||||||||||| Sbjct 92566805 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCCTCCCACCTGACCAG 92566746 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || || ||||||||||| |||| |||| | ||| || |||||||| Sbjct 92566745 CAGAGGCTGATATTCGCCGGCAAACAGCTAGAGGATGGCCACACCCTGTCTGATTACAAC 92566686 Query 25179 ATTCAAAAAGAATCCAC 25195 || || ||||| ||||| Sbjct 92566685 ATCCAGAAAGAGTCCAC 92566669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433311300893030