Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2669 286 4e-72 seq18 221 1e-52 seq6 114 1e-20 seq5 96.9 4e-15 >seq2669 Length=49141 Score = 286 bits (316), Expect = 4e-72 Identities = 454/647 (70%), Gaps = 3/647 (0%) Strand=Plus/Plus Query 93061 TGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTC 93120 ||| || ||||| | | ||| |||| | ||| |||||||| |||||||| ||||| Sbjct 22398 TGGCTTGTGTACCAGGTGCTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTC 22457 Query 93121 TCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTC-GTTTCTTGAGCC 93179 || || | ||||||| ||||| | || || | ||| || | |||||||||||| Sbjct 22458 TCTACTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGCCCCCCGTTTCTTGAGCC 22517 Query 93180 AAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAA 93239 | ||||| || |||||| ||| ||||| || || ||||| || || ||||| ||||||| Sbjct 22518 AGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACAGCGGCAAAGGCCACAA 22577 Query 93240 TACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTT 93299 ||||| || | | || || | |||| || ||||| || || || | Sbjct 22578 CGCGTTCTCCATACGTAGCCTCTTTGTCCCCAGTCCAGCGCAAGGCCCAGTCAGCCTTCT 22637 Query 93300 TCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTC 93359 |||| | |||||| | ||||| ||||| || || || || |||| || | | |||| Sbjct 22638 TCTTCACACAAGGCATCGTTTCAATAGCATTGAAGAGATATTCTCTTTCCTTGGGATCTT 22697 Query 93360 GTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTT 93419 ||||| || || || | || ||||||||||| || | || ||||| ||||||| Sbjct 22698 TAATGTAAGTGTCAATAAGGGGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATTT 22757 Query 93420 GGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGA 93479 |||| || |||||||| | || || || | || |||||||| ||||| ||| || | Sbjct 22758 GGAAGCCATAGAAACAGCGGGCCTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCACCA 22817 Query 93480 GATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAAT 93539 || ||||||||||| ||||| |||||||| ||||||| | ||| |||||||| Sbjct 22818 AGTTCTCATTGACTATGCCATCACTCGCTGCAAAGAAAGCCAGAACATGAGATATAAAAT 22877 Query 93540 GTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGATAGATCTTTTGAAAGATCGACTTCT 93598 || ||||||| ||| || ||||| | | || | ||| || ||||| || || || Sbjct 22878 GTCTCTCATCGGGTTTCAGAGCCTCCCAGTGCTGA-ATATCCTTGGAAAGGTCCACCTCC 22936 Query 93599 TCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGA 93658 ||| |||||||||| || || || ||||| |||||||| | ||| || || || || | Sbjct 22937 TCGGCAGTCCAAAAGGAGGCCTCGGCTTTCTTGTACATCTGCCAGATATCATGGTACTCG 22996 Query 93659 ATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 || ||||| | | || || ||||| ||| | ||||||||||| Sbjct 22997 ATGGGAAAGACAGCGAAGCGGCGGGGGTTTTCTCTCAGTAACGGCTC 23043 >seq18 Length=146158383 Score = 221 bits (244), Expect = 1e-52 Identities = 466/678 (69%), Gaps = 24/678 (4%) Strand=Plus/Plus Query 93038 ATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCA 93097 |||||| ||||||| || | ||| || ||||| | | ||| |||| | | | || Sbjct 66703298 ATTTCTTTTACTCTCTGCTTCGATGGCTTGTGTACCAGGTGCTTGAACATCAGGTAGACA 66703357 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAA-CTCATTGCTGAA-TGTTAAACCTG 93155 ||||| |||||||| ||||||| || || || ||||||| || ||| | || | Sbjct 66703358 AAGTCCCAGTGTAAACCCTCGTCTC-TGCTAATAAGCTCATTGGAAAAATGTAAGGCCCG 66703416 Query 93156 GTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaa-aaTATA 93214 | | |||||| ||||||||||||| ||||| || |||||| |||||||||| || || Sbjct 66703417 GCATCAGTCCCTGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAAGAAGATT 66703476 Query 93215 CCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATC 93274 |||| || || ||||| ||||||| ||||| ||| | | || || | || Sbjct 66703477 GCTTCTACCGCGGCAAAGGCCACAACTCGTTCTGCATATGTAGCTTCTTTGTCCCCAGTC 66703536 Query 93275 CATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAAT 93334 || | || ||||| || || |||| | ||| | |||||| ||||| || || Sbjct 66703537 CAATGCAAGGCCCAGTCAGC---CTTCTCA----CAGGCATTGTTTCAATAGCATTGAAA 66703589 Query 93335 AGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCA 93394 || || |||| || | |||| ||||| || || || | ||| |||||||| | Sbjct 66703590 AGATATTCTCTTTCTTTGCGATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTTA 66703649 Query 93395 GAATGGA-CATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTG 93453 || || | |||| ||| || ||||||| || || ||||| | ||| || || | || Sbjct 66703650 GAGTGTATGCTTCT-CATGCCAGTTTGGAAGCCATA-AAACAGCCAGCCTCTGTAACTTG 66703707 Query 93454 CACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaa 93513 | |||||| ||||| ||| || | ||| |||||| ||| ||||| ||||||||| Sbjct 66703708 AATTTCTTGGCTAAATCGCTCCACCAAGTTTGCATTGAGTATGCCATCACTTGCTGCAAA 66703767 Query 93514 aaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTT--AAGCTTATCCCAAT-C 93570 ||||||| || || |||||||||| ||||||| ||| |||| ||||| | | Sbjct 66703768 GAAAGCCAGAATGTGAGCTATAAAATGTCTCTCATCGGGTTTCACAGCT--TCCCAGTGC 66703825 Query 93571 GGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTT 93630 ||| ||| || ||||| || || || || |||||||||| | || || ||||| | Sbjct 66703826 TGAT--ATCCTTGGAAAGGTCCACCTCCTCAGCAGTCCAAAAGGTGGCCTCAGCTTTCCT 66703883 Query 93631 GTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACG--ATTAG-GGTT 93687 |||||| | ||| || || || || | || ||||| | | || || | || | || Sbjct 66703884 GTACATCTGCCAGATATCATGGTACTAGATGGGAAAGACAGCGAAGCGGCAGCAGAGATT 66703943 Query 93688 ATCTTTTAGTAACGGCTC 93705 ||| ||||||| ||||| Sbjct 66703944 TTCTCTTAGTAAGGGCTC 66703961 >seq6 Length=112758220 Score = 114 bits (126), Expect = 1e-20 Identities = 135/180 (75%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 93061 TGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTC 93120 ||| || ||||| | | ||| |||| | ||| |||||||| |||||||| ||||| Sbjct 9090778 TGGCTTGTGTACCAGGTGCTTGAACATCAGGCAGGCAAAGTCCCAGTGTAAACCCTCGTC 9090719 Query 93121 TCGTGATATCAA-CTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCC 93179 || || || || ||||||| | ||| | || || | |||||| ||||||||||||| Sbjct 9090718 TC-TGCTAATAAGCTCATTGGAAAGTGTAAGGCCCGGCATCAGTCCCCGTTTCTTGAGCC 9090660 Query 93180 AAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAA 93239 | ||| |||| |||||| ||| ||||| || || ||||| |||| ||||| ||||||| Sbjct 9090659 AGAATCTTGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACGGTGGCAAAGGCCACAA 9090600 >seq5 Length=114734182 Score = 96.9 bits (106), Expect = 4e-15 Identities = 102/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 93116 TCGTCTCGTGATATCAA-CTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTT 93174 ||||||| || || || ||||||| ||||| | || || | ||| || |||||||| Sbjct 21262835 TCGTCTC-TGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGCCCCCGTTTCTT 21262777 Query 93175 GAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGC 93234 |||||| ||||| || |||||| ||| ||||| || || ||||| ||||| ||||| || Sbjct 21262776 GAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACGGCGGCAAAGGC 21262717 Query 93235 CACAATACGTTC 93246 ||||| ||||| Sbjct 21262716 CACAACGCGTTC 21262705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556838790076880