Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq4 127 2e-24 seq22 118 9e-22 seq8 98.7 8e-16 seq14 96.9 3e-15 seq25 91.5 1e-13 >seq4 Length=117747451 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || || || || || | || || || || |||||||||| || || || Sbjct 92566868 AACATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTAGAGCCC 92566809 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | || || |||| || || ||||||||||| || | ||||| || Sbjct 92566808 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCCTCCCACCTGAC 92566749 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || ||||| |||||||||||| |||||||| || |||| | || |||||| Sbjct 92566748 CAGCAGAGGCTGATATTCGCCGGCAAACAGCTAGAGGATGGCCACACCCTGTCTGATTAC 92566689 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || ||||| |||||| | || | || |||| ||||||| || Sbjct 92566688 AACATCCAGAAAGAGTCCACCTTGCACCTGGTGCTGCGTCTGCGCGGTGG 92566639 Score = 114 bits (126), Expect = 1e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || || || || || | | || || || |||||||||| || || || Sbjct 57051388 AACATGCAGATCTTCGTAAAGACCCTGATGGGCAAGACCATCACTCTTGAGGTCGAGCCC 57051329 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | || || |||| || || ||||||||||| || || ||||| || Sbjct 57051328 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGAC 57051269 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || ||||| || ||||||||| | |||||| ||||||| | ||||| ||| Sbjct 57051268 CAGCAGAGGCTGATATTAGCGGGCAAACAGCTGGAGGATGGCCGCACCCTGTCCGACTAC 57051209 Query 22396 AACATTCAAAAAGAATCCACC 22416 ||||| || ||||| |||||| Sbjct 57051208 AACATCCAGAAAGAGTCCACC 57051188 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || || ||||| || || || || || | ||||| || || |||| || || ||||| Sbjct 57378717 GTCAAAATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAG 57378776 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 ||| || ||| | || | | || || || || || || ||||| || || || Sbjct 57378777 CCCAGTGACACCATCGAAAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCT 57378836 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || | || || ||||||||||| ||| | || ||| ||||||| |||| ||| Sbjct 57378837 GACCANCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGAT 57378896 Query 22393 TACAACATTCAAAAAGAATCCACC 22416 |||||||| || || || || ||| Sbjct 57378897 TACAACATCCAGAAGGAGTCAACC 57378920 >seq22 Length=147524369 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || || || || || | | || || || |||||||||| || || || Sbjct 136850953 AACATGCAGATCTTCGTGAAGACCCTGANGGGCAAGACCATCACTCTTGAGGTCGAGCCC 136851012 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | || || |||| || || ||||||||||| || || ||||| | Sbjct 136851013 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTAAC 136851072 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || ||||| || ||||||||| | |||||| ||||||| | ||||| ||| Sbjct 136851073 CAGCAGAGGCTGATATTCGCGGGCAAACAGCTGGAGGATGGCCGCACCCTGTCCGACTAC 136851132 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || ||||| |||||| | || | || |||| ||||||| || Sbjct 136851133 AACATCCAGAAAGAGTCCACCTTGCACCTGGTGCTGCGTCTGCGCGGTGG 136851182 >seq8 Length=97450195 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| || || | || || ||||| |||| || || || ||| || | Sbjct 30033075 GATGCAGATCTTTGTGAAGACCCTTACAGGGAAAACCATCACGCTCGAGGTTGAACCCTC 30033016 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || || | || || | || || || || || ||||| || ||||| || ||||| Sbjct 30033015 GGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCA 30032956 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || ||||| || || ||| | || ||| ||| || | || || ||||| Sbjct 30032955 GCAGAGACTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGGACTTTGTCTGACTACAA 30032896 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||| || |||||| | ||| | || ||| || | || || ||| Sbjct 30032895 CATTCAAAAGGAGTCCACCCTTCATCTGGTGTTGAGACTTCGGGGTGGT 30032847 >seq14 Length=171410997 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || | || || ||||| |||| ||||| || ||| || | Sbjct 137735389 ATGCAGATTTTTGTGAAGACCCTTACGGGGAAAACCATCACGCTTGAGGTTGAACCCTCA 137735330 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || || | || || ||||| || ||||| || ||||| Sbjct 137735329 GACACTATAGAAAATGTAAAGGCCAAGACCCAGGATAAGGAAGGAATTCCTCCTGATCAG 137735270 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| || || ||| | || ||| ||| || | || || |||||| Sbjct 137735269 CAGAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATAGCCGGACTTTGTCTGACTACAAC 137735210 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGA 22434 |||||||| || |||||| | ||| | || ||| || Sbjct 137735209 ATTCAAAAGGAGTCCACCTTTCATCTGGTATTGAGA 137735174 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || || ||||| || || || || || | ||||| || || |||| || || ||||| Sbjct 144150580 GTCAAAATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAG 144150521 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 ||| || ||| | || | | || || || || || || ||||| || || || Sbjct 144150520 CCCAGTGACACCATTGAAAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCT 144150461 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || | || || ||||||||||| ||| |||| ||| |||||| |||| ||| Sbjct 144150460 GACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACTCTCTCTGAT 144150401 Query 22393 TACAACATTCAAAAAGAATCCACC 22416 |||||||| || ||||| || ||| Sbjct 144150400 TACAACATCCAGAAAGAGTCGACC 144150377 >seq25 Length=158037523 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | ||||| || || |||| || || ||||| ||| Sbjct 45424653 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 45424594 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | | | | || || || || || || ||||| || || || || || Sbjct 45424593 GACACCATCGCGAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGACCAG 45424534 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||||||||| ||| |||| ||| |||||| |||| ||||||||| Sbjct 45424533 CAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACTCTCTCTGATTACAAC 45424474 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| || ||| Sbjct 45424473 ATCCAGAAAGAGTCGACC 45424456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419711824994530