Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq4 188 1e-42 seq22 176 8e-39 seq8 149 1e-30 seq19 147 4e-30 seq14 143 5e-29 seq25 116 7e-21 seq16 95.1 2e-14 seq23 93.3 8e-14 >seq4 Length=117747451 Score = 188 bits (208), Expect = 1e-42 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || |||| |||| ||| | ||||||||||| |||||||| ||||| || Sbjct 92566639 CCACCGCGCAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCAGAC 92566698 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || ||||| |||| ||| || ||||||||||| || || || ||||| ||||| Sbjct 92566699 AGGGTGTGGCCATCCTCTAGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCAGGTGGG 92566758 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 | ||||||||||||||| ||||| |||||||| |||||||||||| | ||||| Sbjct 92566759 AGGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCTACC 92566818 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || ||||| |||||||| ||||| |||||||| Sbjct 92566819 TCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 92566865 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || ||| | || ||| | ||||||||||| |||||||| || ||||| Sbjct 57051159 CCACCGCGCAGACGCGGCATCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 57051218 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||| || || || ||||| || || || ||||| ||||| Sbjct 57051219 AGGGTGCGGCCATCCTCCAGCTGTTTGCCCGCTAATATCAGCCTCTGCTGGTCAGGTGGG 57051278 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||||||||| ||||| |||||||| |||||||||||| | || || Sbjct 57051279 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACC 57051338 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || ||| | |||||||| ||||| |||||||| Sbjct 57051339 TCAAGAGTGATGGTCTTGCCCATCAGGGTCTTTACGAAGATCTGCAT 57051385 Score = 156 bits (172), Expect = 8e-33 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || || ||||| || |||||||| ||||| ||||| || | |||||||| Sbjct 57378931 ACCAGGTGCAGGGTTGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCTTCC 57378872 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| ||||| || || || || || ||||| || || ||||| || || || || Sbjct 57378871 AGCTGCTTGCCGGCAAAGATCAGCCTCTGNTGGTCAGGGGGGATGCCCTCTTTATCCTGG 57378812 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||| ||| ||||||||||| | || || || | ||||||||| || Sbjct 57378811 ATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTG 57378752 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || || |||||||| ||||| ||||||||| || Sbjct 57378751 CCGGTCAGGGTCTTCACGAAGATCTGCATTTTG 57378719 Score = 116 bits (128), Expect = 7e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 68265 GTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCG 68324 ||||||| || ||||||| | ||||| || || | ||||| || | ||| || || Sbjct 55519196 GTGGACTGGTTCTGGATGTAGCAGTCGGACAGGGTGCAGCCATCCTCCAGCTGTTTGCCA 55519255 Query 68325 GCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTG 68384 |||| | || || |||||||| |||| |||||||| ||||||| ||||| ||||| Sbjct 55519256 TCGAACACCAGCCTCTGTTGGTCAAGTGGGATGCCTTCACTGTCTTGGATCTTGTCCTTG 55519315 Query 68385 ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTC 68444 || |||||||||||| | | || || | |||||||| || |||| |||||| Sbjct 55519316 ACATTCTCGATGGTGTCACTGGGCTTGACCTCAAGAGTGATGGTCTTGTCCGTCAGGGTC 55519375 Query 68445 TTGACGAATATCTGCAT 68461 || ||||| |||||||| Sbjct 55519376 TTCACGAAGATCTGCAT 55519392 Score = 84.2 bits (92), Expect = 4e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 84453 AGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 84512 ||||||||| |||||||||||| ||||| || ||||||| || ||||||||||||| Sbjct 43821318 AGCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 43821259 Query 84513 AGCCCCACATCGGGCAGGTCGGCAGACTTT 84542 |||||||| | |||| || | ||||||| Sbjct 43821258 AGCCCCACGTTGGGCGCGT--GGAGACTTT 43821231 >seq22 Length=147524369 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || |||| |||| ||| | ||||||||||| |||||||| || ||||| Sbjct 136851182 CCACCGCGCAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 136851123 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||| || || |||||||| || || || |||| ||||| Sbjct 136851122 AGGGTGCGGCCATCCTCCAGCTGTTTGCCCGCGAATATCAGCCTCTGCTGGTTAGGTGGG 136851063 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||||||||| ||||| |||||||| |||||||||||| | || || Sbjct 136851062 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACC 136851003 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || ||| | |||||||| ||||| |||||||| Sbjct 136851002 TCAAGAGTGATGGTCTTGCCCNTCAGGGTCTTCACGAAGATCTGCAT 136850956 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| | ||| |||| || || |||||||| ||||| | ||| || || || Sbjct 124974693 CCACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAANGTTGTAGTCAGAC 124974634 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | |||| |||||||| | |||||| || || || || ||||| || || || || ||| Sbjct 124974633 AAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 124974574 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| || || ||||| ||||| || || || ||||| | | ||| || Sbjct 124974573 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACC 124974514 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||||| ||||| |||||||| || || |||||||| Sbjct 124974513 TCGAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACAAAGATCTGCAT 124974467 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||| || | ||||||||||| |||||| | || | ||| Sbjct 93829888 CCACCTCGCAGACGCAGCACCAGGTCCAAGGTGGACTCTTTCTGGATGCTGTAGTTGGAC 93829829 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||| || || |||||||| || | || |||| ||||| Sbjct 93829828 AGGGTGCAGCCATCCTCCAGCTGTTTGCCAGCGAATATCAGCCACTGCTGGTTAGGTGGG 93829769 Query 68355 ATGCCTTCCTTGTCTTGAATCTT 68377 ||| ||||||||||||| ||||| Sbjct 93829768 ATGGCTTCCTTGTCTTGGATCTT 93829746 >seq8 Length=97450195 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| | ||| |||| || || |||||||| ||||| ||||| || || || Sbjct 30032848 CCACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGAC 30032907 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | |||| |||||||| | |||||| || || || || ||||| || || || || ||| Sbjct 30032908 AAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 30032967 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| || || ||||| ||||| || || || ||||| | | ||| || Sbjct 30032968 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACC 30033027 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||||| || || |||||||| || || |||||||| Sbjct 30033028 TCGAGCGTGATGGTTTTCCCTGTAAGGGTCTTCACAAAGATCTGCAT 30033074 Score = 120 bits (132), Expect = 6e-22 Identities = 161/224 (72%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 68242 GAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCC 68301 |||| | ||| |||| || || |||||||| ||||| ||||| || || || | |||| Sbjct 95921290 GAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCC 95921231 Query 68302 TCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTT 68361 |||||||| | |||||| || | || || || || || || || || ||||| | Sbjct 95921230 GGCCATCTTCCAGCTGCTTACCAGTAAAGATCAGCCTCTGCTGATCAGGAGGAAT----T 95921175 Query 68362 CCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGG 68421 |||| || || |||| ||||| || || || ||||| | | ||| || || | Sbjct 95921174 CCTTATCCTGGGTCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGGGCG 95921115 Query 68422 TGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 |||||||||| ||||| |||||||| || || ||||||||| || Sbjct 95921114 TGATGGTTTTCCCCGTAAGGGTCTTCACAAAGATCTGCATTGTG 95921071 >seq19 Length=145277780 Score = 147 bits (162), Expect = 4e-30 Identities = 161/213 (76%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || || ||||| || |||||||| ||||| ||||| || | |||||||| Sbjct 136501845 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCTTCC 136501904 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || || || || || || || ||||| || ||| |||| || || || || Sbjct 136501905 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGA-TGCCCTCTTTATCCTGG 136501963 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||| ||| |||||||||||| | || || |||| ||||||||| || Sbjct 136501964 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 136502023 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 | || |||||||| | ||| ||||||||| || Sbjct 136502024 CTGGTCAGGGTCTTCAGGAAGATCTGCATTTTG 136502056 >seq14 Length=171410997 Score = 143 bits (158), Expect = 5e-29 Identities = 166/224 (74%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 68242 GAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCC 68301 |||| | |||||||| || | |||||||| ||||| ||||| || || || | |||| Sbjct 137735170 GAAGTCTCAATACCAGATGAAAGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCC 137735229 Query 68302 TCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTT 68361 | |||||| | |||||| || || || || || || || || || || ||||| |||| Sbjct 137735230 GGCTATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTT 137735289 Query 68362 CCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGG 68421 |||| || || |||| ||||| || || || ||||||| | ||| || || | | Sbjct 137735290 CCTTATCCTGGGTCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACCTCAAGCG 137735349 Query 68422 TGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 |||||||||| ||||| |||||||| || || ||||||||| || Sbjct 137735350 TGATGGTTTTCCCCGTAAGGGTCTTCACAAAAATCTGCATTGTG 137735393 Score = 111 bits (122), Expect = 3e-19 Identities = 144/195 (74%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 68277 TGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGT 68336 |||||||| ||||| ||||| || | |||||||||| |||||| ||||| || ||||| Sbjct 114264609 TGGATGTTGTAATCAGAGAGGGTGCAGCCATCTTCTAGCTGCTTGCCGGCAAAGATGAGC 114264550 Query 68337 CTTTGTTGGTCGGGTGGAATGCC----TTCCTTGTCTTGAATCTTTGCCTTGACGGCCTC 68392 ||||| ||||| || || ||||| ||| || || || |||| || || ||| ||| Sbjct 114264549 CTTTGCTGGTCAGGGGGGATGCCCTCTTTCTTTTTCCTGGATCTCGGCTTTCACGTTCTC 114264490 Query 68393 GATGGTGT--CTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACG 68450 |||||||| ||| | ||| || | | ||||||||| || || |||||||| | Sbjct 114264489 GATGGTGTCACTG-GGCTTC-ACCTGTAGGGTGATGGTCTTGTTGGTCAGGGTCTTCTTG 114264432 Query 68451 AATATCTGCATTATG 68465 || || |||||| || Sbjct 114264431 AAGATTTGCATTTTG 114264417 >seq25 Length=158037523 Score = 116 bits (128), Expect = 7e-21 Identities = 157/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGT-CCTCC---CATC 68308 |||| ||| || || |||| ||| |||||||| ||||| ||||| || ||| | |||| Sbjct 74175868 ACCAGGTGCAGGGTTGACTATTTCTGGATGTTGTAATCAGAGAGAGTACCTGCGGCCATC 74175809 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 ||||| |||||| | || || || || || || ||||| || | ||||| || || || Sbjct 74175808 TTCTAGCTGCTTGTCAGCAAAGATCAGCCTCTGCTGGTCAGGGGCGATGCCCTCTTTATC 74175749 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 || ||||| || || | |||||||||||| | || || || | ||||||| | Sbjct 74175748 CTGGATCTTGGCTTTCATATTCTCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGAT 74175689 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || | | |||||||| ||||| ||||||||| || Sbjct 74175688 CTTACTGTTCAGGGTCTTCACGAAGATCTGCATTTTG 74175652 >seq16 Length=152576986 Score = 95.1 bits (104), Expect = 2e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 68344 GGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTG 68403 |||| || |||||||||||||||||||| ||||| |||||||| |||| ||||||| Sbjct 90049117 GGTCAGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGGTGGTGTCAC 90049176 Query 68404 CTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCA 68460 | || || || | |||||||| || |||| |||||||| | ||| ||||||| Sbjct 90049177 TGGGCTCGACCTCAAGAGTGATGGTCTTGTCCGTCAGGGTCTTCATGAAGATCTGCA 90049233 >seq23 Length=120012414 Score = 93.3 bits (102), Expect = 8e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 |||||||||||||| ||||| |||||||| |||||||||||| | || || || Sbjct 62722055 CCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCA 62722114 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||||||| || ||||| |||||||| ||||| |||||||| Sbjct 62722115 AGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 62722158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921585972874640