Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2669 219 8e-52 seq6 116 7e-21 seq18 84.2 4e-11 seq8 84.2 4e-11 >seq2669 Length=49141 Score = 219 bits (242), Expect = 8e-52 Identities = 478/707 (68%), Gaps = 23/707 (3%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 |||||| |||| || |||||| ||||||||||| || || |||| ||||| ||| Sbjct 22998 ATCGAGTACCATGATATCTGGCAGATGTACAAGAAAGCCGAGGCCTCCTTTTGGACTGCC 22939 Query 42345 GAGGAGATTGACCTGGCCAAGGACA--CGGCCGGCTGGGAGTCACTGT---CTGA-GAAC 42398 |||||| | ||||| ||||||| | | || ||||||| | ||| | || || Sbjct 22938 GAGGAGGTGGACCTTTCCAAGGATATTCAGCA--CTGGGAGGCTCTGAAACCCGATGAGA 22881 Query 42399 GAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAAT 42458 || | || | |||| | ||||| ||||| || || ||| |||||||||||| Sbjct 22880 GACATTTTATATCTCATG----TTCTGGCTTTCTTTGCAGCGAGTGATGGCATAGTCAAT 22825 Query 42459 GAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAG--TACTTTGAGGCGCGCTGCTTCT 42516 |||||| ||| | || | |||| || || ||| ||||| ||||| |||| Sbjct 22824 GAGAACTTGGTGGAGCGATTTAGCCAAGAAGTTCAAGTTACA--GAGGCCCGCTGTTTCT 22767 Query 42517 ACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACA 42576 | |||||||| || ||||| || ||| | |||||||| ||||| || | ||| Sbjct 22766 ATGGCTTCCAAATTGCCATGGAAAACATACACTCTGAAATGTACAGTCCCCTTATTGACA 22707 Query 42577 CGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCT 42636 | ||||| |||||| || | | || ||||| || || || |||||||| | Sbjct 22706 CTTACATTAAAGATCCCAAGGAAAGAGAATATCTCTTCAATGCTATTGAAACGATGCCTT 22647 Query 42637 GCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCG 42696 | | ||||||||||| |||||||| | ||||| | | || || |||| | Sbjct 22646 GTGTGAAGAAGAAGGCTGACTGGGCCTTGCGCTGGACTGGGGACAAAGAGGCTACGTATG 22587 Query 42697 GCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCT 42756 | || | | || |||||| |||| || || || |||||||| || || | || || | Sbjct 22586 GAGAACGCGTTGTGGCCTTTGCCGCTGTAGAAGGAATCTTCTTTTCCGGTTCTTTTGCAT 22527 Query 42757 CCATCTTCTGGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | || |||||||||||| | || | | |||||| || || || || || || || || Sbjct 22526 CGATATTCTGGCTCAAGAAACGGGGGGCTGATGCCGGGCCTTACATTTTCCAATGAGCTT 22467 Query 42816 ATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTC 42875 || || || |||||||| | || | |||||||||||||| ||||| | ||||| Sbjct 22466 ATTAGTAGAGACGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTTC---AAGCACCTG 22410 Query 42876 AGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAG 42935 |||||||| || || || ||||| | | || ||||| | ||| ||| ||| Sbjct 22409 GTACACAAGCCAGCGGAGCAGAGGGTCAGAGAGATAATCACCAA---CGTTAGGATAGAG 22353 Query 42936 AAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAA 42982 ||||||||||| || || | |||||||| || |||| ||||| Sbjct 22352 CAGGAGTTCCTCCCGGAGGCCTTGCCCGTGAAGCTCATCGGAATGAA 22306 >seq6 Length=112758220 Score = 116 bits (128), Expect = 7e-21 Identities = 182/257 (71%), Gaps = 5/257 (2%) Strand=Plus/Plus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 || |||||| || |||| || || |||||||| || || | || || || | |||||| Sbjct 9090602 GTGGCCTTTGCCACCGTAGAAGGAATCTTCTTTTCCGGTTCTTTTGCATCAAGATTCTGG 9090661 Query 42768 CTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 |||||| | | || | | |||||| || || || | || || || || || ||||| || Sbjct 9090662 CTCAAG-AAACGGGGACTGATGCCGGGCCTTACACTTTCCAATGAGCTTATTAGCAGAGA 9090720 Query 42827 CGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCC 42886 |||||| | || |||||||||||||||| ||||| | ||||| |||||||| Sbjct 9090721 CGAGGGTTTACACTGGGACTTTGCCTGCCTGATGTTC---AAGCACCTGGTACACAAGCC 9090777 Query 42887 CTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCT 42946 || || || ||||| | || ||||| | || || ||| ||| |||| ||||| Sbjct 9090778 AGCGGAGCAGAGGGTCAAAGAGATAATCACCAACGCGGTTAGGATAGAGCAGGACTTCCT 9090837 Query 42947 CACGCAGTCGCTGCCCG 42963 |||| || | |||||| Sbjct 9090838 CACGGAGGCCTTGCCCG 9090854 >seq18 Length=146158383 Score = 84.2 bits (92), Expect = 4e-11 Identities = 135/191 (71%), Gaps = 5/191 (3%) Strand=Plus/Minus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCT-CGGGCGCCTTCGCCTCCATCTTCTG 42766 || |||||| |||| || || | |||||||| | | || | || || || || ||||| Sbjct 66703499 GTGGCCTTTGCCGCGGTAGAAGCAATCTTCTTTTTCTGGTTCTTTTGCATCGATATTCTG 66703440 Query 42767 GCTCAAGCAGAAGGTGTCGATGCCCGGACTCAC-CTTCTCGAACGAACTCATCAGCAGGG 42825 ||||||| | ||| |||||| || || || || || || || || || ||||| | Sbjct 66703439 GCTCAAGAAACAGGGACTGATGCCGGGCCTTACATTTTTCCAATGAGCTTATTAGCAGAG 66703380 Query 42826 ACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGC 42885 ||||||| | || ||||||||| || ||| ||||| | ||||| ||||||| Sbjct 66703379 ACGAGGGTTTACACTGGGACTTTGTCTACCTGATGTTC---AAGCACCTGGTACACAAGC 66703323 Query 42886 CCTCGAAGGAG 42896 | |||||| || Sbjct 66703322 CATCGAAGCAG 66703312 >seq8 Length=97450195 Score = 84.2 bits (92), Expect = 4e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| |||||| | || || || || || |||||||| || | || || Sbjct 32799426 GGGGAGAGAGTGGTGGCCTTTGCTGCTGTGGAAGGAATTTTCTTCTCTGGATCATTTGCT 32799367 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 | || |||||||| ||| ||| ||| || ||||| ||||| || || || || ||||| Sbjct 32799366 GCAATATTCTGGCTAAAGAAGAGAGGCCTC-ATGCCTGGACTGACTTTTTCAAATGAACT 32799308 Query 42815 CATCAGCAGGGACGA 42829 ||||||||||| || Sbjct 32799307 GATCAGCAGGGATGA 32799293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944301874993120