Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq14 140 8e-28 seq4 132 1e-25 seq8 131 4e-25 seq22 127 5e-24 seq25 123 6e-23 seq19 114 3e-20 seq18 86.0 1e-11 seq9 84.2 5e-11 >seq14 Length=171410997 Score = 140 bits (154), Expect = 8e-28 Identities = 148/195 (76%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | ||| ||||| || ||||||| || || || || ||| Sbjct 144150384 TCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAG 144150443 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | ||| || | ||||| || |||||||||||||| || || ||||||||| Sbjct 144150444 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTT 144150503 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| |||||||| ||||| ||| Sbjct 144150504 TCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 144150563 Query 288463 AATATCTGCATTATG 288477 || ||||||||| || Sbjct 144150564 AAGATCTGCATTTTG 144150578 >seq4 Length=117747451 Score = 132 bits (146), Expect = 1e-25 Identities = 146/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || || | ||| ||||| || ||||| | || || || || ||| Sbjct 57378913 TCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 57378854 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | ||| || | ||||| || |||||||||||||| || || ||||||||| Sbjct 57378853 ATCAGCCTCTGNTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTT 57378794 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| |||||||| ||||| ||| Sbjct 57378793 TCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 57378734 Query 288463 AATATCTGCATTATG 288477 || ||||||||| || Sbjct 57378733 AAGATCTGCATTTTG 57378719 >seq8 Length=97450195 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| ||| || ||||| || || ||||| | Sbjct 30032848 CCACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGAC 30032907 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || ||||| | || || || || |||||||| | ||| ||| | || Sbjct 30032908 AAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 30032967 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||||| || | ||| || Sbjct 30032968 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACC 30033027 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||||| || ||||| || || ||||| || || |||||||| Sbjct 30033028 TCGAGCGTGATGGTTTTCCCTGTAAGGGTCTTCACAAAGATCTGCAT 30033074 >seq22 Length=147524369 Score = 127 bits (140), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| ||| || ||||| | || ||||| | Sbjct 124974693 CCACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAANGTTGTAGTCAGAC 124974634 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || ||||| | || || || || |||||||| | ||| ||| | || Sbjct 124974633 AAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 124974574 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||||| || | ||| || Sbjct 124974573 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACC 124974514 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||||| || ||||| || || ||||| || || |||||||| Sbjct 124974513 TCGAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACAAAGATCTGCAT 124974467 >seq25 Length=158037523 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | ||| ||||| || ||||||| || || || || ||| Sbjct 45424463 TCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAG 45424522 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | ||| || | ||||| || |||||||||||||| || || |||||||| Sbjct 45424523 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTC 45424582 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 | || | || || | || || || || ||||| ||||| |||||||| ||||| || Sbjct 45424583 GCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACA 45424642 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 45424643 AAGATCTGCAT 45424653 Score = 104 bits (114), Expect = 6e-17 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||| | || || || | ||| ||||| || ||||| | ||| || ||||| ||| Sbjct 146223676 TCTTTCTGGTTGTTGTAATCAGAGAGGGTGCGGCCATCTTCCAGTTGCTTGCCTGCAAAG 146223735 Query 288343 ATCAGACGCTGTTGAGAATCTGG-GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || || | ||| || || || ||| | |||||||||||||| || || |||||||| Sbjct 146223736 ATGAGCCTCTGCTGG---TCGGGAGATGGCCTCTTTATCCTGGATCTTGGCCTTCACGTT 146223792 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || || | || | || || ||||| ||||| || || || ||||| | Sbjct 146223793 CTCGATGGTTTCACTGGGCTCCATCTCTAGGGTGATGGTCTTGCCAGTTAGGGTCTTCAT 146223852 Query 288462 GAATATCTGCATT 288474 ||| ||||||||| Sbjct 146223853 GAAGATCTGCATT 146223865 Score = 93.3 bits (102), Expect = 1e-13 Identities = 139/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 288285 TTTTTGGATATTATAGTCGGCGAGCGT----GCGTCCGTCTTCTAATTGTTTTCCTGCGA 288340 ||| ||||| || || || | ||| || ||| || ||||||| || || | || | Sbjct 74175848 TTTCTGGATGTTGTAATCAGAGAGAGTACCTGCGGCCATCTTCTAGCTGCTTGTCAGCAA 74175789 Query 288341 AGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGT 288400 ||||||| | ||| || | | ||| || |||||||||||||| || ||||||| | Sbjct 74175788 AGATCAGCCTCTGCTGGTCAGGGGCGATGCCCTCTTTATCCTGGATCTTGGCTTTCATAT 74175729 Query 288401 TTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGA 288460 | || || | || || | || || || || ||||| |||| | | |||| ||||| | Sbjct 74175728 TCTCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGATCTTACTGTTCAGGGTCTTCA 74175669 Query 288461 CGAATATCTGCATTATG 288477 |||| ||||||||| || Sbjct 74175668 CGAAGATCTGCATTTTG 74175652 >seq19 Length=145277780 Score = 114 bits (126), Expect = 3e-20 Identities = 143/195 (73%), Gaps = 1/195 (1%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || || | ||| ||||| || ||||| | || || || || ||| Sbjct 136501863 TCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 136501922 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | ||| || | ||||| || |||||||||||||| || || |||||||| Sbjct 136501923 ATCAGCCTCTGCTGGTCAGG-GGGATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTC 136501981 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| | |||||| ||||| | | Sbjct 136501982 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCTGGTCAGGGTCTTCAGG 136502041 Query 288463 AATATCTGCATTATG 288477 || ||||||||| || Sbjct 136502042 AAGATCTGCATTTTG 136502056 >seq18 Length=146158383 Score = 86.0 bits (94), Expect = 1e-11 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| || || ||||| | | || || | |||| | || || || |||||| Sbjct 124961193 TCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCTATCTTTCAGCTGCTTACCAGCGAAG 124961252 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | ||| | | | || |||||||| ||||||||| | || || || || || Sbjct 124961253 ATCAGCCTCTGCTTACCAGGAGGAATTCCTTCCTTATCCTGGGTCTTGGCCTTTACATTA 124961312 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 ||||||| || | ||| || || |||||||| | |||||| | || ||||| | Sbjct 124961313 TCTATAGTGTCCGAGGGTTCAACCTCCAGCGTGATGGCCTTCCCCATAAGGGTCTTCAGA 124961372 Query 288463 AATATCTGCATTATG 288477 || |||||||| ||| Sbjct 124961373 AAAATCTGCATCATG 124961387 >seq9 Length=92629107 Score = 84.2 bits (92), Expect = 5e-11 Identities = 144/209 (69%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 288265 ACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCT 288324 || ||||||| ||| || |||| || || ||||| | || || || ||||| Sbjct 13017539 ACAAGATGAAGGGTGGACTCCCTTTGAATGTTGTAGTC----AAAGTCCGGCCATCTTCC 13017484 Query 288325 AATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGG 288384 | || || || || |||| ||| | ||| ||| | | | |||||| ||||||||| Sbjct 13017483 AGCTGCTTACCAGCAAAGACCAGCCTCTGCTGATCAGGAGCAAGTCCTTCCTTATCCTGG 13017424 Query 288385 ATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTC 288444 || || || || || |||||||||| | | ||| || || |||||||| |||||| Sbjct 13017423 ATCTTGGCCTTTACATTTTCTATAGTGTTTGAGGGTTCAACCTCAAGCGTGATGGTCTTC 13017364 Query 288445 CCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || || |||||||| Sbjct 13017363 CCCAAAAGGGTCTTCACAAAAATCTGCAT 13017335 Score = 84.2 bits (92), Expect = 5e-11 Identities = 158/231 (68%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | || || | || ||||||| ||| || |||| || || ||||| | Sbjct 13458721 CCACCCTGAAGGCTCAACACCAGATGAAGGGTGGACTCCCTTTGAATGTTGTAGTCAGAC 13458662 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || ||||| | || || || || |||| ||| | ||| ||| | | Sbjct 13458661 AAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGACCAGCCTCTGGTGATCAGGAGCA 13458602 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 | |||| ||| | ||||||| || || || || |||||||| | || | || || Sbjct 13458601 AGTCCTCCTTAA-CCTGGATCTTGGCCTTTACATTTTCTATGGTGTCCAGGGGTTTAACC 13458543 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 ||||||||||| |||||||| | || ||||| || || ||||||||| || Sbjct 13458542 TCGAGCGTGATGGTCTTCCCCATAAGGGTCTTCACAAAAATCTGCATTGTG 13458492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179606608513836