Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq22 120 3e-22 seq8 118 1e-21 seq25 105 7e-18 seq14 98.7 1e-15 seq6 98.7 1e-15 seq4 93.3 5e-14 seq19 91.5 2e-13 seq1 91.5 2e-13 seq3 89.7 6e-13 >seq22 Length=147524369 Score = 120 bits (132), Expect = 3e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 41996 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 42055 |||||||| ||| | ||| ||||||||||| ||||| |||| || |||||| | || Sbjct 124974679 CAACACCAGATGAAGGGTGGACTCCTTTTGAANGTTGTAGTCAGACAAAGTCCGGCCATC 124974620 Query 42056 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115 || |||||||||||||| || || |||| |||||| || | || | | ||||| || Sbjct 124974619 TTCCAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 124974560 Query 42116 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 42175 | ||| || || | | | | ||||| | ||| || |||| ||||||||| Sbjct 124974559 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 124974500 Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| ||||| || ||||| |||||||| ||||| Sbjct 124974499 TTTCCCCGTAAGGGTCTTCACAAAGATCTGCAT 124974467 >seq8 Length=97450195 Score = 118 bits (130), Expect = 1e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 41996 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 42055 |||||||| ||| | ||| |||||||||||| ||||| |||| || |||||| | || Sbjct 30032862 CAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATC 30032921 Query 42056 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115 || |||||||||||||| || || |||| |||||| || | || | | ||||| || Sbjct 30032922 TTCCAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 30032981 Query 42116 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 42175 | ||| || || | | | | ||||| | ||| || |||| ||||||||| Sbjct 30032982 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 30033041 Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || || || ||||| |||||||| ||||| Sbjct 30033042 TTTCCCTGTAAGGGTCTTCACAAAGATCTGCAT 30033074 >seq25 Length=158037523 Score = 105 bits (116), Expect = 7e-18 Identities = 167/238 (70%), Gaps = 1/238 (0%) Strand=Plus/Plus Query 41971 TAATTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATAT 42030 ||||| || | || || || | ||| | |||| |||| || ||| || || || | Sbjct 45424417 TAATTAATAG-CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGT 45424475 Query 42031 TGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCT 42090 ||||||||| ||||| || | || ||||||||||| || || || || || | ||||| Sbjct 45424476 TGTAATCAGAGAGAGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCT 45424535 Query 42091 GGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGC 42150 |||| | || | || ||| || ||| ||| || || | |||| | ||||| | Sbjct 45424536 GGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTCGCGATGGTGTCAC 45424595 Query 42151 TCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | | ||||| || | |||||||| ||||| || || ||||| |||||||| ||||| Sbjct 45424596 TGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 45424653 >seq14 Length=171410997 Score = 98.7 bits (108), Expect = 1e-15 Identities = 169/244 (69%), Gaps = 1/244 (0%) Strand=Plus/Plus Query 41971 TAATTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATAT 42030 ||||| || | || || || | ||| | |||| |||| || ||| || || || | Sbjct 144150338 TAATTAATAG-CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGT 144150396 Query 42031 TGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCT 42090 ||||||||| ||||| || | || ||||||||||| || || || || || | ||||| Sbjct 144150397 TGTAATCAGAGAGAGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCT 144150456 Query 42091 GGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGC 42150 |||| | || | || ||| || ||| ||| || || | | | | ||||| | Sbjct 144150457 GGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTTTCAATGGTGTCAC 144150516 Query 42151 TCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTT 42210 | | ||||| || | |||||||| ||||| || || ||||| || ||||| ||||||| Sbjct 144150517 TGGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTT 144150576 Query 42211 TCAC 42214 | || Sbjct 144150577 TGAC 144150580 >seq6 Length=112758220 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 57002 ATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 57061 ||||||||| || | | |||||||||| ||||||||||||||||||||| |||||||| Sbjct 17100571 ATTTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCAC 17100630 Query 57062 CACTATACTACCGAGGA 57078 |||||||||| |||||| Sbjct 17100631 CACTATACTAACGAGGA 17100647 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 17076199 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 17076140 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 17076139 TACTAACGAGGA 17076128 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 17105422 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 17105481 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 17105482 TACTAACGAGGA 17105493 >seq4 Length=117747451 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 63771494 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 63771435 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 63771434 TATACTAACGAGGA 63771421 >seq19 Length=145277780 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 118373761 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 118373820 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 118373821 ATACTAACGAGGA 118373833 >seq1 Length=185492789 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 161296426 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 161296485 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 161296486 ATACTAACGAGGA 161296498 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 161360539 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 161360480 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 161360479 ATACTAACGAGGA 161360467 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| | |||||||||| Sbjct 71917054 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGACACTCACCACT 71917113 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 71917114 ATACTAACGAGGA 71917126 >seq3 Length=122627250 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 87165102 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 87165161 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 87165162 TACTAACGAGGA 87165173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543191329514080