Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq14 136 4e-27 seq4 127 2e-24 seq25 122 9e-23 seq19 118 1e-21 seq8 98.7 1e-15 seq22 95.1 1e-14 seq6 84.2 2e-11 >seq14 Length=171410997 Score = 136 bits (150), Expect = 4e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| ||||| || ||||||||||| | || ||||| | ||||| |||||||||||| Sbjct 144150378 GTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCTTCTAGCTGCTTGCCG 144150437 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||||||||| || || || || ||||| || || || || ||| Sbjct 144150438 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTC 144150497 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | || |||| || ||||| |||| || | |||||||||||||| || Sbjct 144150498 ACGTTTTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTCAGGGTC 144150557 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||| || |||||||| Sbjct 144150558 TTCACGAAGATCTGCATTTT 144150577 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/193 (72%), Gaps = 6/193 (3%) Strand=Plus/Minus Query 64259 TGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGC 64318 || ||||||||||| | || ||||| | ||||| ||||||||||||||| | |||||| Sbjct 114264609 TGGATGTTGTAATCAGAGAGGGTGCAGCCATCTTCTAGCTGCTTGCCGGCAAAGATGAGC 114264550 Query 64319 CGCTGCTGGTCGGGAGGAAT----TCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCT 64373 | |||||||| || || || || ||||||||| || | | | ||||| || || Sbjct 114264549 CTTTGCTGGTCAGGGGGGATGCCCTCTTTCTTTTTCCTGGA-TCTCGGCTTTCACGTTCT 114264491 Query 64374 CCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 | | || |||| || | ||| | || || | ||||||| ||||| || || || Sbjct 114264490 CGATGGTGTCACTGGGCTTCACCTGTAGGGTGATGGTCTTGTTGGTCAGGGTCTTCTTGA 114264431 Query 64434 AAATTTGCATTTT 64446 | ||||||||||| Sbjct 114264430 AGATTTGCATTTT 114264418 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || ||||||| || || || |||||||||||||| || | | || || ||||| Sbjct 137735181 ACCAGATGAAAGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCTATCTTCC 137735240 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 |||||||| || ||| | || |||| |||||| || |||||||||||||| || || || Sbjct 137735241 AGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 137735300 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414 | || ||||||| || | || || || || || || | || | ||| || Sbjct 137735301 GTCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACCTCAAGCGTGATGGTTTTC 137735360 Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || | || || || ||||| |||||| Sbjct 137735361 CCCGTAAGGGTCTTCACAAAAATCTGCATT 137735390 Score = 82.4 bits (90), Expect = 8e-11 Identities = 113/155 (73%), Gaps = 6/155 (4%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| ||||||| || || || |||||||||||||| || Sbjct 86690335 ACCACCACGAAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTC--- 86690279 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || | | |||| ||||||||||| ||| | || | || |||||| || ||||| Sbjct 86690278 -AAAGTATGGCCATCTTTCAGCTGCTTGCCAGCACAGATCAACCTCTGCTGATCAGGAGG 86690220 Query 64336 AATTCC-TTCTTTTTCTTGTATTTTTTGCTTTACA 64369 |||||| ||||| ||| || || || ||||||| Sbjct 86690219 AATTCCTTTCTTATTC-TGGATCTTGGCCTTTACA 86690186 >seq4 Length=117747451 Score = 127 bits (140), Expect = 2e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || ||||||||||| | || |||||| | ||||| |||||||||||| Sbjct 57378919 GTTGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 57378860 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||| ||||| || || || || ||||| || || || || ||| Sbjct 57378859 GCAAAGATCAGCCTCTGNTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTC 57378800 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | || |||| || ||||| |||| || | |||||||||||||| || Sbjct 57378799 ACGTTTTCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTCAGGGTC 57378740 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||| || |||||||| Sbjct 57378739 TTCACGAAGATCTGCATTTT 57378720 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| || || | || || ||||| || ||||||||||| | Sbjct 92566639 CCACCGCGCAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCAGAC 92566698 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||| | | || || ||||| |||||||| | || |||| ||||||||| || || Sbjct 92566699 AGGGTGTGGCCATCCTCTAGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCAGGTGGG 92566758 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 | ||||| || ||||| || || ||| ||| ||| | || |||| || || || Sbjct 92566759 AGGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCTACC 92566818 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | ||| | ||||||||| |||| || || ||||| || ||||| || Sbjct 92566819 TCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGTT 92566868 >seq25 Length=158037523 Score = 122 bits (134), Expect = 9e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| ||||| || ||||||||||| | || ||||| | ||||| |||||||||||| Sbjct 45424457 GTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCTTCTAGCTGCTTGCCG 45424516 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||||||||| || || || || ||||| || || || || ||| Sbjct 45424517 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTC 45424576 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || | | | || |||| || ||||| || | || | |||||||||||||| || Sbjct 45424577 ACGTTCGCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 45424636 Query 64427 TTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 45424637 TTCACAAAGATCTGCAT 45424653 Score = 113 bits (124), Expect = 5e-20 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| ||||| || |||||||||| | || |||||| | ||||| || |||||||| Sbjct 146223670 GTCGACTCTTTCTGGTTGTTGTAATCAGAGAGGGTGCGGCCATCTTCCAGTTGCTTGCCT 146223729 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| |||||||||||||| || | ||||| || || || || ||| Sbjct 146223730 GCAAAGATGAGCCTCTGCTGGTCGGGAG--ATGGCCTCTTTATCCTGGATCTTGGCCTTC 146223787 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || |||| || |||| |||| || | ||||||||| || | || Sbjct 146223788 ACGTTCTCGATGGTTTCACTGGGCTCCATCTCTAGGGTGATGGTCTTGCCAGTTAGGGTC 146223847 Query 64427 TTTACGAAAATTTGCATTT 64445 || | ||| || ||||||| Sbjct 146223848 TTCATGAAGATCTGCATTT 146223866 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || ||||||||||| | || |||||| | ||||| ||||||||||| Sbjct 45424685 GTTGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 45424744 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| | || |||| ||||||||| || || || || ||||| || || || || Sbjct 45424745 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTT 45424797 >seq19 Length=145277780 Score = 118 bits (130), Expect = 1e-21 Identities = 147/200 (74%), Gaps = 1/200 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || ||||||||||| | || |||||| | ||||| ||||||||||| Sbjct 136501857 GTCGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 136501916 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||||||||| || || || || ||||| || || || || ||| Sbjct 136501917 GCAAAGATCAGCCTCTGCTGGTCAGG-GGGATGCCCTCTTTATCCTGGATCTTGGCCTTC 136501975 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || |||| || ||||| || | || | |||||||| ||||| || Sbjct 136501976 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCTGGTCAGGGTC 136502035 Query 64427 TTTACGAAAATTTGCATTTT 64446 || | ||| || |||||||| Sbjct 136502036 TTCAGGAAGATCTGCATTTT 136502055 >seq8 Length=97450195 Score = 98.7 bits (108), Expect = 1e-15 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| ||||||| || || || |||||||||||||| || | Sbjct 30032847 ACCACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGA 30032906 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| |||||||| || ||| | || || | |||||| || ||||| Sbjct 30032907 CAAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 30032966 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACA 64369 ||||||||| || || || || || ||||||| Sbjct 30032967 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 30033000 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| | ||| ||||||| || || || |||||||||||||| || | | || || | Sbjct 95921286 TCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCC 95921227 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTT 64343 ||||| |||||||| || | | | || |||| |||||| || ||||||||||||| Sbjct 95921226 ATCTTCCAGCTGCTTACCAGTAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTT 95921171 >seq22 Length=147524369 Score = 95.1 bits (104), Expect = 1e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| ||||||| || || || ||||||| |||||| || | Sbjct 124974694 ACCACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAANGTTGTAGTCAGA 124974635 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| |||||||| || ||| | || || | |||||| || ||||| Sbjct 124974634 CAAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 124974575 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACA 64369 ||||||||| || || || || || ||||||| Sbjct 124974574 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 124974541 >seq6 Length=112758220 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| ||||||| || || || |||||||||||||| || | Sbjct 8842459 ACCACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGA 8842518 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| |||||||| || ||| | |||| |||||| || |||| Sbjct 8842519 CAAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGGCCAGCCTCTGCTGATCAGGAGC 8842578 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACA 64369 || |||||| || || || || || ||||||| Sbjct 8842579 AAGTCCTTCCTTATCCTGGATCTTGGCCTTTACA 8842612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499625051539280