Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq8 96.9 3e-15 seq22 93.3 4e-14 seq14 91.5 1e-13 >seq8 Length=97450195 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 ||| || | ||| | | | ||||||||||||||||||||||| || ||| || || Sbjct 30032862 CAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATC 30032921 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 || || || ||||| | | |||| || | ||| || || ||||| || ||||| || || Sbjct 30032922 TTCCAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 30032981 Query 138522 GGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581 ||| || |||| | ||| | ||||| | | || ||||||| ||| | || Sbjct 30032982 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 30033041 Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| || || || || || ||||| |||||||| Sbjct 30033042 TTTCCCTGTAAGGGTCTTCACAAAGATCTGCAT 30033074 >seq22 Length=147524369 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 ||| || | ||| | | | ||||||||||||| ||||||||| || ||| || || Sbjct 124974679 CAACACCAGATGAAGGGTGGACTCCTTTTGAANGTTGTAGTCAGACAAAGTCCGGCCATC 124974620 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 || || || ||||| | | |||| || | ||| || || ||||| || ||||| || || Sbjct 124974619 TTCCAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 124974560 Query 138522 GGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581 ||| || |||| | ||| | ||||| | | || ||||||| ||| | || Sbjct 124974559 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 124974500 Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| || || || || || ||||| |||||||| Sbjct 124974499 TTTCCCCGTAAGGGTCTTCACAAAGATCTGCAT 124974467 >seq14 Length=171410997 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 ||| || | ||| | | | ||||||||||||||||||||||| || ||| || || Sbjct 137735177 CAATACCAGATGAAAGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCTATC 137735236 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 || || || ||||| | | |||| || | ||| || || ||||| || ||||| || || Sbjct 137735237 TTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 137735296 Query 138522 GGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581 | | || |||| | ||| | ||||| | | || ||||| | ||| | || Sbjct 137735297 CTGGGTCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACCTCAAGCGTGATGGT 137735356 Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| || || || || || |||||||||||||| Sbjct 137735357 TTTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 137735389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496242785228640