Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq4 105 6e-18 seq25 96.9 3e-15 seq14 95.1 1e-14 >seq4 Length=117747451 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| ||||| || | || |||||||| || || |||||||| | Sbjct 92566639 CCACCGCGCAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCAGAC 92566698 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| | ||| ||||||||||| || ||| | |||| | |||||| || || || Sbjct 92566699 AGGGTGTGGCCATCCTCTAGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCAGGTGGG 92566758 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 | ||| |||||||| ||| || ||||| | |||| |||||| | ||| || Sbjct 92566759 AGGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCTACC 92566818 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | || ||||| ||||| || || || || ||||||||| Sbjct 92566819 TCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 92566866 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || |||||||| | ||||| ||| || ||||| || || Sbjct 57378919 GTTGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 57378860 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | ||| || || || || |||||||| || ||| ||| || ||| Sbjct 57378859 GCAAAGATCAGCCTCTGNTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTC 57378800 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||||| |||||| | ||| || || | ||| | || ||||||||||| || Sbjct 57378799 ACGTTTTCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTCAGGGTC 57378740 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 57378739 TTCACGAAGATCTGCAT 57378723 >seq25 Length=158037523 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || || |||||||| | ||||| ||| |||||||| || || Sbjct 45424457 GTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCTTCTAGCTGCTTGCCG 45424516 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || || |||||||| || ||| ||| || ||| Sbjct 45424517 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTC 45424576 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||| |||||| | ||| || || | ||| | || ||||||||||| || Sbjct 45424577 ACGTTCGCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 45424636 Query 127097 TTTACAAAAATCTGCATG 127114 || ||||| ||||||||| Sbjct 45424637 TTCACAAAGATCTGCATG 45424654 >seq14 Length=171410997 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || || |||||||| | ||||| ||| |||||||| || || Sbjct 144150378 GTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCTTCTAGCTGCTTGCCG 144150437 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || || |||||||| || ||| ||| || ||| Sbjct 144150438 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTC 144150497 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||| | |||||| | ||| || || | ||| | || ||||||||||| || Sbjct 144150498 ACGTTTTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTCAGGGTC 144150557 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 144150558 TTCACGAAGATCTGCAT 144150574 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| | | || ||| |||| ||| | || ||||| |||||||| ||||| || Sbjct 137735160 GCACCACCCTGAAGTCTCAATACCAGATGAAAGGTGGACTCCTTTTGAATGTTGTAGTCA 137735219 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || ||||| || ||||| |||||| | ||||||||| ||| Sbjct 137735220 GACAAAGTCCGGCTATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGA 137735279 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| | | || ||| | | ||| | ||||| | || Sbjct 137735280 GGAATTCCTTCCTTATCCTGGGTCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCA 137735339 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | || | ||||| || || || || || |||||||||||||| Sbjct 137735340 ACCTCAAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 137735389 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| | | || |||||||| ||| | || ||||| |||||||| ||||| || Sbjct 64263825 GCACCACCAAGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCA 64263884 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || | ||| || ||||| || ||||| |||||| | ||||||||| || Sbjct 64263885 GACAAAGTCCAGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAAGA 64263944 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 | | || ||||| ||| ||| || ||| | | ||| | ||||| | || Sbjct 64263945 GCAAGTCCTTCCTTATCCTAGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCA 64264004 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||||| | | | ||| || || || || || |||||||||||||| Sbjct 64264005 ACTTCGAGCGAGATGGGTTTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 64264054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475482005830880