Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq1 172 8e-38 seq14 127 3e-24 seq997 100 4e-16 >seq1 Length=185492789 Score = 172 bits (190), Expect = 8e-38 Identities = 209/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || ||||| ||||||||||| || ||||| |||||||| | || || || | ||| Sbjct 140817380 AAGGGACACCCCTTCACATTATTGCAGATGAGAGACTGAATTGAGGCAGTATTGATGATC 140817321 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 | ||||| || || || || |||||||| || |||||||| || || |||||| Sbjct 140817320 TTAAAACCCACTTCACCTCCAAAGGTGCTAGGCTTCCAGTATTGAGGAGAACAGATGGGA 140817261 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 || |||| || ||||||||||| || || || || || || | ||| |||| || ||| Sbjct 140817260 TTTCCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTCTCCCCAAAG 140817201 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 || ||| | ||||| |||||||| || | | | ||| || ||||| | | |||| | Sbjct 140817200 ATAGCATCTGGACGAGGTTTTTCCACCAGCAGGGCAGGATACAGTTCCATGACATCGATG 140817141 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || | ||||||||||||||||| ||||| || |||||||| ||| Sbjct 140817140 TCACTGTAGAGGGCTTCCAACTCTGCAGCCATTTCCTTCTCTCCT 140817096 Score = 131 bits (144), Expect = 2e-25 Identities = 206/293 (70%), Gaps = 4/293 (1%) Strand=Plus/Minus Query 9432 CCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAG 9491 ||| || ||||||||||| ||||| || ||||| || || | | |||||| | | ||| Sbjct 140816272 CCGGCCAGCAATCTGTCTGGTGAATGACTCAACAAACTGAGTGAGTCCGTGTTCCAGGAG 140816213 Query 9492 GATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATC 9551 |||||| |||||||| | || |||| | | | ||||| | ||| | ||| || Sbjct 140816212 GATGGAGTTGTTGTAGAGAAACTGTTTGAAGCTATACTCCTGGTCTTCAATGTTGAAGGT 140816153 Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611 ||||||| ||| | |||||| | ||||| || ||||| || | || ||||||||||| Sbjct 140816152 GTCAGGCAGCAGGGGGTGCCAGTGATAGAGTGTGTTGAATTCAGAGGCAATTCGGTTCTG 140816093 Query 9612 GTACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTAC 9669 ||||| || | ||| ||| || | ||| |||||||| | || | ||||||||| Sbjct 140816092 ATACTGGAATTGCTGGT--TGAAAAGGAGCTCTGGGTCAAACTTGAGTTTGAAGTGGTAA 140816035 Query 9670 CCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722 ||||| || || || || || | | ||| | || || || || || || || Sbjct 140816034 CCGCTCAGGTGTTGCACGTAGTCTTCGATCACTATCTTGATAGTCTCTCCTGT 140815982 Score = 100 bits (110), Expect = 4e-16 Identities = 195/287 (68%), Gaps = 1/287 (0%) Strand=Plus/Plus Query 8890 CAACG-GACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGA 8948 ||||| |||| ||||||||||| ||||||| |||||| | || || || | || Sbjct 141030559 CAACGAGACACCCCTTCACATTTTTGTAAATGAGAGACTGAGTTAAGGCAGTGTTGATGA 141030618 Query 8949 TGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGA 9008 | | |||| || | || | ||||||||| || |||||||| || || ||||| Sbjct 141030619 TCTTAAAACGAACTACTCCACTGAAGGTGCTCGGCTTCCAGTATTGAGGAGAATAGATGG 141030678 Query 9009 CGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGA 9068 || || | || ||||||||||| || || | | || || | | | || || | Sbjct 141030679 GATTACCCCTAAGTCCTTTCAAGGAGAATGGTGTTTCAAGTTCTACCAAAGTGTCCCCAA 141030738 Query 9069 AGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGA 9128 |||| ||| | |||| || ||||| || | || ||||| |||||||| | | || | Sbjct 141030739 AGATAGCATCTGGACAGGGCTTTTCCACCAGGAGGCCAGGATAGAGTTCAATGGTGTCAA 141030798 Query 9129 CGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 | | |||||| || |||| | |||||||| |||||||| ||| Sbjct 141030799 GGCCAGTGAAGAGGGATTTCAACCCTGCAGCTATTTCCTTCTCTCCT 141030845 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||| ||||| || | ||||| ||||||||| | || ||||| || | || || Sbjct 140813991 TCACCCTTCACACCCATGGGAGTTGGGCAGTCATCTGCTACTGGAGGAAGGATCCTGGTG 140813932 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 || ||||| || || ||||| ||||||||||| ||||| ||||| | | ||||| Sbjct 140813931 TAGTAGGAGAGGTTGGAAAAGGCTTCCCAGCTTTTGTAACCATAGTGCACATTGTAAGTA 140813872 Query 10507 GGGGGACTGTCAATCA 10522 || ||||||||||||| Sbjct 140813871 GGTGGACTGTCAATCA 140813856 >seq14 Length=171410997 Score = 127 bits (140), Expect = 3e-24 Identities = 172/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 || || || || | || || || ||||| || ||||| |||||||||||||||||| | Sbjct 32140984 GCTGTGTTGACAAGGTTGAAGCCCACGTCACCACCGAACGTGCTGGGTTTCCAGTACTCT 32140925 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 ||||| |||||| ||| | | ||| || || | |||||| |||||||||| ||| || Sbjct 32140924 GGGGAACAGATGGGATTCCCTAGGAGGCCCTTGAGGGAAAAGGGAGCCCCCATCTCTATC 32140865 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 || || || || ||||| | ||| | || || | | || || | ||||| Sbjct 32140864 ATACTTTCCCCAAAGATAGAGTTGGGCTGGCACTTCTCCAGCAGCAACCCCGGGTAGAAC 32140805 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || | ||| |||| ||| || || || | |||||||| ||||| ||||||||||| ||| Sbjct 32140804 TCTAAAGCATCGATGTCACCGTACAGCTCCTCCAACTCAGCAGCCATCTCCTTCTCTCCT 32140745 >seq997 Length=100386 Score = 100 bits (110), Expect = 4e-16 Identities = 193/285 (68%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || ||| | ||||||||||| || ||||| |||||||| | || || || | ||| Sbjct 11277 AAGGGAAACCCCTTCACATTTTTGCAGATGAGAGACTGAATTGAGGCAGTATTGATGATC 11336 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 | |||| || || || | ||||||||| | ||| |||| || || | || | Sbjct 11337 TTAAAACTCACTTCTCCACTGAAGGTGCTCAGCTTCAGGTACTGGGGAGAACCGACGGGA 11396 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 || || | || ||||||||||| || || || || || || | ||| ||| || ||| Sbjct 11397 TTACCCCTAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTCTTCCCAAAG 11456 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 || ||| | |||| || ||| | | | | | ||| || ||||| | || |||| | Sbjct 11457 ATAGCATCTGGACAAGGCTTTCCTGCCAGCAGGGCAGGATACAGTTCTATGGCATCGATG 11516 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 | | |||| |||| |||||| ||||| || ||||| || ||| Sbjct 11517 GCACTGAAGAGAGCTTTCAACTCTGCAGCCATTTCCTTTTCTCCT 11561 Score = 84.2 bits (92), Expect = 3e-11 Identities = 172/254 (68%), Gaps = 4/254 (2%) Strand=Plus/Plus Query 9432 CCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAG 9491 ||| || ||||||||||| ||||| || |||| || || | | ||| |||| ||| Sbjct 12358 CCGGCCAGCAATCTGTCTGGTGAATGACTCAAAAAACTGAGTAAATCCTCCTTTGAGGAG 12417 Query 9492 GATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATC 9551 |||||| |||||||| | || || | | | | || | | ||| | || || Sbjct 12418 GATGGAGTTGTTGTAGAGAAACTGATTGAAGCTGTATTCCTGGTCCTCAGTGTTGAAGGT 12477 Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611 || |||| ||| | |||||| | ||||| || ||||| || | || || || ||||| Sbjct 12478 ATGGGGCAGCAGGGGTTGCCAGTGATAGAGTGTGTTGAATTCAGAGGCAATGCGATTCTG 12537 Query 9612 GTACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTAC 9669 ||||| || | ||| ||| || | ||| |||||||| | || | ||||||||| Sbjct 12538 ATACTGGAACTGCTGGT--TGAAAAGGAGCTCTGGGTCAAACTTGAGTTTGAAGTGGTAA 12595 Query 9670 CCGCTGAGTTGCTG 9683 || || || || || Sbjct 12596 CCACTCAGGTGTTG 12609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723699394650800