Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_013055.1 Length=39896 Score E Sequences producing significant alignments: (Bits) Value seq2171 116 9e-22 >seq2171 Length=2622 Score = 116 bits (128), Expect = 9e-22 Identities = 193/277 (70%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 8842 GAGGTCGCCGAAATATCGCGCGCACTCAAACAAATTGCGAAGGAACTCGACGTTCCGATC 8901 ||| | || ||||| || || |||| ||| | ||||| || || | || || | Sbjct 1487 GAGATTGCTGAAATCTCCCGTTCACTGAAAGCGTTGGCGAAAGAGCTGCAAGTGCCTGTG 1546 Query 8902 ATCGCGCTGTCGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCCGTCATG 8961 | |||||||||||| | || ||| | || ||| | || | |||| || || |||| Sbjct 1547 GTGGCGCTGTCGCAGTTGAACCGAAGCCTGGAGCAGCGTGCCGACAAACGTCCGGTCAAC 1606 Query 8962 TCCGATCTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTCTTTATCTAC 9021 ||||| ||||| ||||| || | |||||||||||||||||| |||| | || |||||| Sbjct 1607 TCCGACCTGCGTGAGTCTGGCTCCATCGAGCAGGATGCCGACCTGATTATGTTCATCTAC 1666 Query 9022 CGCGATGAGGTCTATAACCCCGACAGCG--CAGATCGCGGTACGGCCGAAATCATCATTG 9079 || |||||||| ||| || |||||| | || || | |||||||| || | | Sbjct 1667 CGTGATGAGGTTTATCACGAGAACAGCGATCTGA--AAGGGATTGCCGAAATTATTTTAG 1724 Query 9080 CGAAGCAGCGAAACGGGCCGATTGGCACCGTACGGCT 9116 ||||| || ||||| || || || |||| || || Sbjct 1725 GTAAGCAACGTAACGGCCCAATCGGTTCCGTGCGCCT 1761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127540810822152