Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq22 89.7 6e-13 >seq22 Length=147524369 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 116460 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCC 116519 |||||| ||| |||||||||| ||||| ||||||| || | || ||||| || Sbjct 105164805 CTCATCTTTACTGGTGTACTCTACTATTTCTGTACACAGGTTGCTGCATTTGATGGTTCC 105164746 Query 116520 CAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCC 116579 || ||||| || || ||| |||||| | ||| ||||||||||| ||||| || || Sbjct 105164745 CAGGTTCTGCTGGTTGCTCTTCCGGTTACAGGAATCTTTGTAGAGCATGTATGGGGTACC 105164686 Query 116580 CGTCTCCGTTTGGGACT 116596 |||||||| ||||||| Sbjct 105164685 GGTCTCCGTCTGGGACT 105164669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613482951127920