Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq2669 111 3e-19 >seq2669 Length=49141 Score = 111 bits (122), Expect = 3e-19 Identities = 478/739 (65%), Gaps = 19/739 (3%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCA-TG-GATATTGATTCCATGAACCCGAATGGG 159706 |||||| || ||||| ||||| || || | || |||||| ||||||| | | || || Sbjct 22161 CTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAGATATT--TTCCATGCAGTCAAACGGA 22218 Query 159707 TTCTTCACG-TGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAA 159765 || | || ||| | ||| ||| || || || || | |||||| |||||||| Sbjct 22219 TTTTCTACTCTGAAAAT-CTTGTTAAAACCCAGCTCCAGCATAAGCCTGTCGGCCACAAA 22277 Query 159766 TTCGATGTAGCTACA-CATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTT 159824 || || || || | |||| || || || || | ||| | ||||| | || | Sbjct 22278 CTCAATATA-CTGCTTCATCAAAGTGCAATTCATTCCGATGAGCTTCACGGGCAAGGCCT 22336 Query 159825 CCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGT 159884 ||| || ||||||| ||| ||| | | || | ||| | |||| ||| | | | Sbjct 22337 CCGGGAGGAACTCCTGCTCTATC-CTAACGTT--GGTGATTATCTCTCTGACCCTCTGCT 22393 Query 159885 ACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTC 159944 | | |||||| | | ||| ||| |||| ||||| |||||||| ||||| | | Sbjct 22394 CCGCTGGCTTGTGTACCAGGTG---CTTGAACATCAGGCAGGCAAAGTCACAGTGTAAAC 22450 Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGT- 160003 ||||||| | | || | ||| ||||| | | ||||||||||| | ||| | || | Sbjct 22451 CCTCGTCTCTACTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGCCC-CCCGTTT 22509 Query 160004 -TTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAA 160062 |||||||| || || | ||||||| |||| ||| ||||| || || || || ||||| Sbjct 22510 CTTGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACAGCGGCAAA 22569 Query 160063 CGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTC 160122 ||||| | | || ||| | | || | |||| ||||| | |||||| || Sbjct 22570 GGCCACAACGCGTTCTCCATACGTAGCCTCTTTGTCCCCAGTCCAGCGCAAGGCCCAGTC 22629 Query 160123 AGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACA-ATCTGTCCTGCTCCT 160181 ||||||||| | || ||||| || | || || || | || | || |||| Sbjct 22630 AGCCTTCTTCTTCACACAAGGCATCGTTTCAATAGCATTGAAGAGATAT-TCTCTTTCCT 22688 Query 160182 TCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGA 160241 | ||| || || ||| |||| || ||||||||| | ||| | ||||| | Sbjct 22689 TGGGATCTTTAATGTAAGTGTCAATAAGGGGACTGTACATTTCAGAGTGTATGTTTTCCA 22748 Query 160242 TGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACC 160301 |||| || || ||| |||||| | ||||| | || || || || | || | Sbjct 22749 TGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACTTGAACTTCTTGGCTAAATC 22808 Query 160302 TTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAG 160361 | ||| || |||| || | || || || ||||||||||||| || |||| Sbjct 22809 GCTCCACCAAGTTCTCATTGACTATGCCATCACTCGCTGCAAAGAAAGCCAGAACATGAG 22868 Query 160362 AGATGAAATGTCTCTCGTC 160380 | || ||||||||||| || Sbjct 22869 ATATAAAATGTCTCTCATC 22887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795123771490720