Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq8 132 1e-25 seq14 131 4e-25 seq22 123 6e-23 seq4 113 1e-19 seq18 105 1e-17 seq6 98.7 2e-15 seq9 89.7 1e-12 >seq8 Length=97450195 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| || || ||||| |||||||| |||||||| ||||| || | | ||| | Sbjct 30032857 AGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGG 30032916 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| ||||||||||| || ||||| |||| || || || |||||||| ||||| Sbjct 30032917 CCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCC 30032976 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || || || ||| || || || || |||||||| ||| || || || || Sbjct 30032977 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTG 30033036 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | || || || || | ||||| Sbjct 30033037 ATGGTTTTCCCTGTAAGGGTCTTCACAAAGATCTGCAT 30033074 Score = 96.9 bits (106), Expect = 8e-15 Identities = 153/219 (70%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| || || ||||| |||||||| |||||||| ||||| || | | ||| | Sbjct 95921288 AGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGG 95921229 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| ||||||||||| | ||||| || | || || || ||||||| ||| Sbjct 95921228 CCATCTTCCAGCTGCTTACCAGTAAAGATCAGCCTCTGCTGATCAGGAGGAA----TTCC 95921173 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || | || ||| || || || || |||||||| ||| || || | || Sbjct 95921172 TTATCCTGGGTCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGGGCGTG 95921113 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | || || || || | || || || || | |||||| Sbjct 95921112 ATGGTTTTCCCCGTAAGGGTCTTCACAAAGATCTGCATT 95921074 >seq14 Length=171410997 Score = 131 bits (144), Expect = 4e-25 Identities = 158/214 (74%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || || |||||||| | ||||| | |||||||| Sbjct 144150366 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCTTCT 144150425 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || ||||| || || ||||| ||||| || || Sbjct 144150426 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGG 144150485 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| ||||| ||||||||||| ||| ||||| || ||||| | ||| Sbjct 144150486 ATCTTGGCCTTCACGTTTTCAATGGTGTC---ACTGGGCTCCACCTCTAGGGTGATGGTC 144150542 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || |||| || || ||||| | ||||||| Sbjct 144150543 TTGCCGGTCAGGGTCTTCACGAAGATCTGCATTT 144150576 Score = 111 bits (122), Expect = 3e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| || || |||| |||||||| |||||||| ||||| || | | ||| | Sbjct 137735172 AGTCTCAATACCAGATGAAAGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGG 137735231 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 | |||||| ||||||||||| || ||||| || | || || || |||||||| ||||| Sbjct 137735232 CTATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCC 137735291 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || | || ||| || || || || ||||| || ||| || ||||| || Sbjct 137735292 TTATCCTGGGTCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACCTCAAGCGTG 137735351 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | || || || || | || || || || | |||||| Sbjct 137735352 ATGGTTTTCCCCGTAAGGGTCTTCACAAAAATCTGCATT 137735390 Score = 102 bits (112), Expect = 2e-16 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| || || ||||| |||||||| |||||||| ||||| || | | ||| | Sbjct 64263837 AGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCAG 64263896 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| ||||||||||| || ||||| || | || || || ||| || ||||| Sbjct 64263897 CCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAAGAGCAAGTCCTTCC 64263956 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || || | || || ||| || || || || ||||| || ||| ||||| || Sbjct 64263957 TTATCCTAGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACTTCGAG 64264012 >seq22 Length=147524369 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| || || ||||| |||||||| ||||||| ||||| || | | ||| | Sbjct 124974684 AGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAANGTTGTAGTCAGACAAAGTCCGG 124974625 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| ||||||||||| || ||||| |||| || || || |||||||| ||||| Sbjct 124974624 CCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCC 124974565 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || || || ||| || || || || |||||||| ||| || || || || Sbjct 124974564 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTG 124974505 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || || || | || || || || | ||||| Sbjct 124974504 ATGGTTTTCCCCGTAAGGGTCTTCACAAAGATCTGCAT 124974467 Score = 109 bits (120), Expect = 1e-18 Identities = 152/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| | ||||||||||| || || ||||| |||| || || | ||||| || Sbjct 136851164 ACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCC 136851105 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || ||||| || || | || |||| || || |||||||| |||||||| Sbjct 136851104 AGCTGTTTGCCCGCGAATATCAGCCTCTGCTGGTTAGGTGGGATGCCTTCCTTGTCTTGG 136851045 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||| ||||| |||||||| ||| || || ||||| || | ||| Sbjct 136851044 ATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCGACCTCAAGAGTGATGGTC 136850988 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || ||| || || ||||| | ||||| Sbjct 136850987 TTGCCCNTCAGGGTCTTCACGAAGATCTGCAT 136850956 >seq4 Length=117747451 Score = 113 bits (124), Expect = 1e-19 Identities = 151/209 (72%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 194935 AGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGC 194994 ||||| | ||||||||||| || || ||||| |||| || || | ||||| || ||| Sbjct 57051180 AGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGC 57051239 Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054 || || || || || || || | || ||||| || || |||||||| |||||||| || Sbjct 57051240 TGTTTGCCCGCTAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATC 57051299 Query 195055 TTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTT 195111 || |||||| ||||| |||||||| ||| || || ||||| || | ||||| Sbjct 57051300 TTGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCGACCTCAAGAGTGATGGTCTTG 57051356 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||| || |||||||| | ||||| Sbjct 57051357 CCCATCAGGGTCTTTACGAAGATCTGCAT 57051385 Score = 109 bits (120), Expect = 1e-18 Identities = 152/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| | ||||||||||| || || |||||||| | || || ||||| || Sbjct 92566657 ACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCAGACAGGGTGTGGCCATCCTCT 92566716 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || ||||| || || | || ||||| || || | |||||| |||||||| Sbjct 92566717 AGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCAGGTGGGAGGCCTTCCTTGTCTTGG 92566776 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||| ||||| |||||||| ||| || || ||||| || | ||| Sbjct 92566777 ATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCTACCTCAAGAGTGATGGTC 92566833 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || ||||| | ||||| Sbjct 92566834 TTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 92566865 Score = 96.9 bits (106), Expect = 8e-15 Identities = 142/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 ||||| | || || || ||||| || | ||| || | ||||| || ||||| || ||| Sbjct 55387592 GTGGAATGGTTCTGGATGTTGTAGTCTGAAAGGGTGCGTCCATCCTCCAGCTGTTTGCCT 55387651 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 ||||| | || | || ||||| || ||||||||||||||||| || || |||| Sbjct 55387652 GCGAATACCAGCCTCTGCTGGTCAACTGGGATGCCTTCTTTGTCTTGGATCTTGACCTTG 55387711 Query 195064 ACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAA 195120 || |||| |||||||| ||| ||||| |||| || | ||||| ||||||| Sbjct 55387712 ACATTCTTGATGGTGTC---ACTGGGCTCCACCTCAAAAGTGATGGTCTTGCCTGTCAGG 55387768 Query 195121 GTTTTTACGAACACTTGCAT 195140 || || ||||| | ||||| Sbjct 55387769 GTCTTCACGAAGATCTGCAT 55387788 >seq18 Length=146158383 Score = 105 bits (116), Expect = 1e-17 Identities = 133/182 (73%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGA---GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 |||||||| |||||||||||| |||||||| |||||||| ||||| || | | ||| Sbjct 124961163 AGTCTCAACACAAGGTGAAGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 124961222 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | | ||||| ||||||||||| |||||||| || | || | | |||||||| ||| Sbjct 124961223 CGGCTATCTTTCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTTACCAGGAGGAATTCCT 124961282 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGG 195099 || || || || | || ||| || || || || |||||||| ||| || || || Sbjct 124961283 TCCTTATCCTGGGTCTTGGCCTTTACATTATCTATAGTGTCCGAGGGTTCAACCTCCAGC 124961342 Query 195100 GT 195101 || Sbjct 124961343 GT 124961344 >seq6 Length=112758220 Score = 98.7 bits (108), Expect = 2e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| || || ||||| |||||||| |||||||| ||||| || | | ||| | Sbjct 8842469 AGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGG 8842528 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| ||||||||||| || ||| || | || || || |||| || ||||| Sbjct 8842529 CCATCTTCCAGCTGCTTACCAGCAAAGGCCAGCCTCTGCTGATCAGGAGCAAGTCCTTCC 8842588 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCC 195081 || || || || || ||| || || || || |||||| Sbjct 8842589 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCC 8842627 >seq9 Length=92629107 Score = 89.7 bits (98), Expect = 1e-12 Identities = 129/182 (71%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| ||||| |||||||| ||||||| ||||| || | ||| | |||||||| Sbjct 13017539 ACAAGATGAAGGGTGGACTCCCTTTGAATGTTGTAGTC----AAAGTCCGGCCATCTTCC 13017484 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| || |||| || | || || || |||| || ||||| || || || Sbjct 13017483 AGCTGCTTACCAGCAAAGACCAGCCTCTGCTGATCAGGAGCAAGTCCTTCCTTATCCTGG 13017424 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || || || || |||| || ||| || ||||| || | ||||| Sbjct 13017423 ATCTTGGCCTTTACATTTTCTATAGTGTTTGAGGGTTCAACCTCAAGCGTGATGGTCTTC 13017364 Query 195112 CC 195113 || Sbjct 13017363 CC 13017362 Score = 86.0 bits (94), Expect = 1e-11 Identities = 115/159 (72%), Gaps = 1/159 (1%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 || ||||| || || ||||| |||||||| ||||||| ||||| || | | ||| | Sbjct 13458712 AGGCTCAACACCAGATGAAGGGTGGACTCCCTTTGAATGTTGTAGTCAGACAAAGTCCGG 13458653 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| ||||||||||| || |||| || | || || || |||| || | | || Sbjct 13458652 CCATCTTCCAGCTGCTTACCAGCAAAGACCAGCCTCTGGTGATCAGGAGCAA-GTCCTCC 13458594 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCC 195081 || | || || || ||| || || || ||||||||| Sbjct 13458593 TTAACCTGGATCTTGGCCTTTACATTTTCTATGGTGTCC 13458555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109436651433254