Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2669 376 3e-99 seq18 210 2e-49 seq6 123 3e-23 seq8 111 2e-19 seq5 104 3e-17 seq22 84.2 2e-11 >seq2669 Length=49141 Score = 376 bits (416), Expect = 3e-99 Identities = 645/932 (69%), Gaps = 18/932 (2%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATTC---ATTACTCCCAT 18668 ||| || ||| ||||||| | ||||||||||||| | |||||| || |||||||| Sbjct 22083 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG---TCGAATTCGACATGACTCCCAT 22139 Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 | ||||| ||| | |||| || |||||||| || || ||||| |||| ||| ||| Sbjct 22140 CCTCTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAGATATT 22199 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 |||||| | ||||| ||||||| ||| | | || || || || || | || | | Sbjct 22200 TTCCATGCAGTCAAACGGATTTTCTACTCTGAAAATCTTGTTAAAACCCAGCTCCAGCAT 22259 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 || || || || ||||| | |||||| ||||||| | ||||||||||| || | Sbjct 22260 AAGCCTGTCGGCCACAAACTCAATATACTGCTTCATCAAAGTGCAATTCATTCCGATGAG 22319 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 || || || | || || | || || || || ||||| | || | | || || Sbjct 22320 CTTCACGGGCAAGGCCTCCGGGAGGAACTCCTGCTCTATCCTAACG---TTGGTGATTAT 22376 Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAA 18968 | || || | || || || || || || || ||||||| || ||||| Sbjct 22377 CTCTCTGACCCTCTGCTCCGCTGGCTTGTGTACCAGGTGCTTGAACATCAGGCAGGCAAA 22436 Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028 ||||| |||| |||||||||||||| || | ||||| |||||||| | || ||||| Sbjct 22437 GTCACAGTGTAAACCCTCGTCTCTACTAATAAGCTCATTGGAAAATGTAAGGCCCGGCAT 22496 Query 19029 CAGTCCTCttttttttAA-CCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087 ||| || | ||| || | ||||||||| || ||||| || || |||||||| || |||| Sbjct 22497 CAGCCCCCCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATTCCTT 22556 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATT 19147 |||| || ||||| || || | | ||||||||| |||| || || | | |||| Sbjct 22557 CTACAGCGGCAAAGGCCACAACGCGTTCTCCATACGTAGCCTCTTTGTCCCCAGTCCAGC 22616 Query 19148 TCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGAT 19207 || ||||| ||||||||||| || ||||| ||||| || || |||| ||| || |||| Sbjct 22617 GCAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATCGTTTCAATAGCATTGAAGAGAT 22676 Query 19208 ACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAA----ACTGTACATTTCT 19263 | | || | | ||||||| ||| | | ||||||| |||||||||||| Sbjct 22677 ATTCTCTTTCCTTGGGATCTTTA----ATGTAAGTGTCAATAAGGGGACTGTACATTTCA 22732 Query 19264 GAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGT 19323 || || || ||||| || || || || || || || ||||| | || ||||| | || Sbjct 22733 GAGTGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACTTGA 22792 Query 19324 ACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAA 19383 ||||| | ||||| || ||||| || ||||| ||||| |||||||| |||||||| Sbjct 22793 ACTTCTTGGCTAAATCGCTCCACCAAGTTCTCATTGACTATGCCATCACTCGCTGCAAAG 22852 Query 19384 AATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTA 19443 || || | ||||| ||||||||| | ||||| | | | | | ||| | | | Sbjct 22853 AAAGCCAGAACATGAGATATAAAATGTCTCTCATCGGGTTTCAGAGCCTCCCAGTGCTGA 22912 Query 19444 ATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATAC 19503 ||||| || || | || || || || | |||||||| || ||||| ||||| || ||| Sbjct 22913 ATATCCTTGGAAAGGTCCACCTCCTCGGCAGTCCAAAAGGAGGCCTCGGCTTTCTTGTAC 22972 Query 19504 ATGTTCCATATATCACGATATTGTATAGGAAA 19535 || | ||| |||||| | || | || ||||| Sbjct 22973 ATCTGCCAGATATCATGGTACTCGATGGGAAA 23004 >seq18 Length=146158383 Score = 210 bits (232), Expect = 2e-49 Identities = 413/599 (69%), Gaps = 19/599 (3%) Strand=Plus/Plus Query 18943 AGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAAT 19002 || || || ||||||| | |||| || || |||| ||||||||||| || || | Sbjct 66703334 AGGTGCTTGAACATCAGGTAGACAAAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGC 66703393 Query 19003 TCATTAGAAAA-TGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGC 19061 ||||| ||||| ||| | || ||||||||||| ||| || | ||||||||| || || Sbjct 66703394 TCATTGGAAAAATGTAAGGCCCGGCATCAGTCCCTGTTTCTTGAGCCAGAATATCGATGC 66703453 Query 19062 AAATGATCCAG-AAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCAT 19120 ||| || |||| ||||||| || ||||||| || ||||| || || | || |||| ||| Sbjct 66703454 AAAAGAACCAGAAAAAGAAGATTGCTTCTACCGCGGCAAAGGCCACAACTCGTTCTGCAT 66703513 Query 19121 AACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATG 19180 | |||| || || | | |||| | || ||||| |||||||||| |||| | Sbjct 66703514 ATGTAGCTTCTTTGTCCCCAGTCCAATGCAAGGCCCAGTCAGCCTTCT------CACA-G 66703566 Query 19181 GCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGT---ATCTTTAACATATG 19237 ||||||| || |||| ||| || |||| || | || ||| | |||||||| || | Sbjct 66703567 GCATTGTTTCAATAGCATTGAAAAGAT--ATTCTCT-TTCTTTGCGATCTTTAATGTAAG 66703623 Query 19238 CATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCA-TCTGAAATCCG 19296 || || | | ||| ||||||| || || || |||| |||| | || || || Sbjct 66703624 TGTCAATAAGGAGACTATACATTTTAGAGTGTAT-GCTTCTCATGCCAGTTTGGAAGCCA 66703682 Query 19297 TAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCA 19356 | |||||| | || ||||| | || | ||| | ||||| || ||||| ||| || Sbjct 66703683 T-AAAACAGCCAGCCTCTGTAACTTGAATTTCTTGGCTAAATCGCTCCACCAAGTTTGCA 66703741 Query 19357 TTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCA 19416 || | ||| |||||||| |||||||| || || | | || ||||||||| | ||| Sbjct 66703742 TTGAGTATGCCATCACTTGCTGCAAAGAAAGCCAGAATGTGAGCTATAAAATGTCTCTCA 66703801 Query 19417 TCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTC 19476 || | | || | |||| | | ||||| || || | || || || ||| | ||| Sbjct 66703802 TC-GGGTTTCACAGCTTCCCAGTGCTGATATCCTTGGAAAGGTCCACCTCCTCAGCAGTC 66703860 Query 19477 CAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAA 19535 ||||| | ||||| ||||| | ||||| | ||| |||||| | || | || ||||| Sbjct 66703861 CAAAAGGTGGCCTCAGCTTTCCTGTACATCTGCCAGATATCATGGTACTAGATGGGAAA 66703919 >seq6 Length=112758220 Score = 123 bits (136), Expect = 3e-23 Identities = 133/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 18943 AGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAAT 19002 || || || ||||||| || ||||| || || |||| ||||||||||| || || | Sbjct 9090765 AGGTGCTTGAACATCAGGCAGGCAAAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGC 9090706 Query 19003 TCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA 19062 ||||| |||| ||| | || ||||||||||| | ||| || | ||||||| | || ||| Sbjct 9090705 TCATTGGAAAGTGTAAGGCCCGGCATCAGTCCCCGTTTCTTGAGCCAGAATCTTGATGCA 9090646 Query 19063 AATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCC 19118 || || || |||||||| || |||||||| | ||||| || || | ||||| ||| Sbjct 9090645 AAAGAACCGGAAAAGAAGATTCCTTCTACGGTGGCAAAGGCCACAACTCTTTGTCC 9090590 Score = 111 bits (122), Expect = 2e-19 Identities = 117/151 (77%), Gaps = 6/151 (4%) Strand=Plus/Plus Query 18608 ATGGTTAAAAATCAACATCCAAAGAAAAAGAATTCTCT-TC--ATTAGAATTCATTACTC 18664 ||| ||| || ||| ||||||| | ||||||||||||| || ||| || ||| |||| Sbjct 9090298 ATGCTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCGAATTCGA---CATGACTC 9090354 Query 18665 CCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATA 18724 ||||| | ||||| ||| | |||| || |||||||| || || ||||| |||| ||| | Sbjct 9090355 CCATTCTCTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAGA 9090414 Query 18725 TACATTCCATAAAATCAAATGGATTTTTTAC 18755 || |||||| || ||||| ||||||| ||| Sbjct 9090415 TATTTTCCATGAAGTCAAACGGATTTTCTAC 9090445 >seq8 Length=97450195 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || || || || |||| |||||| ||||| || | |||||||| || ||||| || ||| Sbjct 32799293 TCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAGGCCTCTCTTCTTT 32799352 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||| | ||||||||||||||| ||||| || ||||| || || ||||| || Sbjct 32799353 AGCCAGAATATTGCAGCAAATGATCCAGAGAAGAAAATTCCTTCCACAGCAGCAAAGGCC 32799412 Query 19105 ACTAGTCTTTCTCC 19118 || | ||| || || Sbjct 32799413 ACCACTCTCTCCCC 32799426 >seq5 Length=114734182 Score = 104 bits (114), Expect = 3e-17 Identities = 113/147 (77%), Gaps = 6/147 (4%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCT-TC--ATTAGAATTCATTACTCCCAT 18668 ||| || ||| ||||||| | ||||||||||||| || ||| || ||| |||||||| Sbjct 21263925 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCGAATTCGA---CATGACTCCCAT 21263869 Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 | ||||| ||| | |||| || |||||||| || || ||||| |||| ||| ||| Sbjct 21263868 CCTCTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAGATATT 21263809 Query 18729 TTCCATAAAATCAAATGGATTTTTTAC 18755 |||||| || ||||| ||||||| ||| Sbjct 21263808 TTCCATGAAGTCAAACGGATTTTCTAC 21263782 >seq22 Length=147524369 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| || ||||| ||||||||||| | ||| || | || || | |||||| || | Sbjct 105172285 TCCAACCGTAGAAGTGCATACTAGTGAGTTTGCCGTAGTTGGGCTCAGCAATATGGATGT 105172226 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||| || |||||||| || || |||||||| || |||||||| | | || | | Sbjct 105172225 TTAAAGACTGGCTCTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTCT 105172166 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | || | || ||||| || || ||||| | ||| || | ||| || || Sbjct 105172165 TCTGAGAGATTTCCCACACGGTCTTATAGAGTTGCTTCAGGTCATCAGG 105172117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562086582649680