Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq2345 89.7 6e-13 seq118 89.7 6e-13 seq11 89.7 6e-13 >seq2345 Length=32694 Score = 89.7 bits (98), Expect = 6e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 14174 TAAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGAT 14233 ||| |||| ||| || || | |||||| ||||| ||||||||||||||| || || | Sbjct 28830 TAACCCTTTATGGTGCACATGACATGTATATCTCAGCTCTTCTCCAGAAGGAACCACCAC 28889 Query 14234 AGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATC 14293 |||| |||| || || || || ||||| || || || | || ||| | |||| | || Sbjct 28890 AGCTGCCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTGTCTGGCAGCTCCATGTC 28949 Query 14294 TTGACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACC 14353 ||| | || | | || || | | ||| || || | || ||||| || || || || Sbjct 28950 TTGGGTGTGGTTGTTCCCATCCCTCTTCCAAGTCATGGTGATGTCAGCTGGGTAGAAGCC 29009 Query 14354 CAAAGCCCAGCACC 14367 || |||||||||| Sbjct 29010 CAGGGCCCAGCACC 29023 >seq118 Length=29605 Score = 89.7 bits (98), Expect = 6e-13 Identities = 140/200 (70%), Gaps = 8/200 (4%) Strand=Plus/Plus Query 14172 GGTAAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACG 14231 ||||| |||||||| || || | |||||||||||| ||||||||||||||| || || Sbjct 9847 GGTAACCCTTCATGGTGCACATGACATGTGTATCTTAGCTCTTCTCCAGAAGGAACCACC 9906 Query 14232 ATAGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTA 14291 | |||| |||| || || || || ||||| || || || | || ||| | |||| | Sbjct 9907 ACAGCTGCCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTGTCTGGCAGCTCCATG 9966 Query 14292 TCTTGACT----TTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATA 14347 || || | ||| || | ||| || | ||| || || | |||||||| || || Sbjct 9967 TCCTGGGTGTGGTTGTTCCTATCCCTC----TTCCAGGTCATGGTGATATCAGCTGGGTA 10022 Query 14348 AAAACCCAAAGCCCAGCACC 14367 || | || ||||| |||| Sbjct 10023 GAATCTCAGGGCCCAACACC 10042 >seq11 Length=89975685 Score = 89.7 bits (98), Expect = 6e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 14169 CCGGGTAAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACG 14228 || ||||| |||||||| || || | ||||||||||| ||||||||||||||| || Sbjct 33486502 CCAGGTAACCCTTCATGGTGCACATGGCATGTGTATCTCAGCTCTTCTCCAGAAGGAACC 33486561 Query 14229 ACGATAGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCT 14288 || | |||| |||| || || || || ||||| || || || | || ||| | |||| Sbjct 33486562 ACCACAGCTGCCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTGTCTGGCAGCTCC 33486621 Query 14289 GTATCTTGACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAA 14348 | || || | || | | || || | | ||| || | | || |||| || || Sbjct 33486622 ATGTCCTGGGTGTGGTTGTTCCCATCCCTCTTCCAGGTCAGGGTGATGTCAGATGGGTAG 33486681 Query 14349 AAACCCAAAGCCCAGCACC 14367 ||||||| |||||||||| Sbjct 33486682 AAACCCAGGGCCCAGCACC 33486700 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 14172 GGTAAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACG 14231 ||||| |||||||| || || | |||||||||||| ||||||||||| || || || Sbjct 33358155 GGTAACCCTTCATGGTGCACATGACATGTGTATCTCAGCTCTTCTCCAGGGGGAACCACC 33358214 Query 14232 ATAGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTA 14291 | |||| |||| || || || || ||||| || || || | || ||| | |||| | Sbjct 33358215 ACAGCTGCCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTGTCTGGCAGCTCCATG 33358274 Query 14292 TCTTGACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAA 14351 || ||| | || | | || |||| | ||| || | | || ||||| || || || Sbjct 33358275 TCCTGAGTGTGGTTGTTCCCATCTCTCTTCCAGGTCAGGGTGATGTCAGCTGGGTAGAAT 33358334 Query 14352 CCCAAAGCCCAGCACC 14367 | || |||||||||| Sbjct 33358335 CTCAGGGCCCAGCACC 33358350 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 14172 GGTAAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACG 14231 ||||| |||||||| || || | |||||||||||| ||||||||||||||| || || Sbjct 33395666 GGTAACCCTTCATGGTGCACATGACATGTGTATCTCAGCTCTTCTCCAGAAGGAACCACC 33395725 Query 14232 ATAGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTA 14291 | |||| |||| || || || || ||||| || || || | || ||| | |||| | Sbjct 33395726 ACAGCTGCCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTGTCTGGCAGCTCCATG 33395785 Query 14292 TCTTGACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAA 14351 || || | || | | || || | | ||| || | | || || || || || || Sbjct 33395786 TCCTGGGTGTGGTTGTTCCCATCCCTCTTCCAGGTCAGGGTGATGTCGGCTGGGTAGAAG 33395845 Query 14352 CCCAAAGCCCAGCACC 14367 |||| |||||||||| Sbjct 33395846 CCCAGGGCCCAGCACC 33395861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629258327581520