Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_016762.1 Length=49135 Score E Sequences producing significant alignments: (Bits) Value seq2171 109 2e-19 >seq2171 Length=2622 Score = 109 bits (120), Expect = 2e-19 Identities = 142/191 (74%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 21269 GACATGTCCCGC-CAGTGCAAGCTGCTGGCGATGGAGCTTGGTATCCCCGTGATCGTGCT 21327 || || ||||| || || |||| | |||||| ||||| | || ||| | | ||| Sbjct 1496 GAAATCTCCCGTTCACTGAAAGC-GTTGGCGAAAGAGCTGCAAGTGCCTGTGGTGGCGCT 1554 Query 21328 GTCGCAGCTCAACCGCTCCCTGGAGCAGCG-GCCGAACAAGCGACCGATGATGTCGGACC 21386 ||||||| | ||||| |||||||||||| |||| |||| || ||| | | || |||| Sbjct 1555 GTCGCAGTTGAACCGAAGCCTGGAGCAGCGTGCCG-ACAAACGTCCGGTCAACTCCGACC 1613 Query 21387 TGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTTCGTGTACCGCGACG 21446 |||| ||||| || | ||||||||||| ||||| |||| |||||| | ||||| || | Sbjct 1614 TGCGTGAGTCTGGCTCCATCGAGCAGGATGCCGACCTGATTATGTTCATCTACCGTGATG 1673 Query 21447 AGGTCTACCAC 21457 |||| || ||| Sbjct 1674 AGGTTTATCAC 1684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157104500700868