Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq2669 212 7e-50 seq18 150 2e-31 seq6 96.9 4e-15 seq5 91.5 2e-13 >seq2669 Length=49141 Score = 212 bits (234), Expect = 7e-50 Identities = 323/459 (70%), Gaps = 1/459 (0%) Strand=Plus/Plus Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 || ||||| ||||| |||||||| || |||||||| || | ||||| ||||| || | Sbjct 22429 CAGGCAAAGTCACAGTGTAAACCCTCGTCTCTACTAATAAGCTCATTGGAAAATGTAAGG 22488 Query 37236 CCTGGCATTAAACCTCttttt-ttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAA 37294 || ||||| | || | ||| || | ||| ||||| | ||||||||| || |||||||| Sbjct 22489 CCCGGCATCAGCCCCCCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAA 22548 Query 37295 AATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGA 37354 || ||||| || || ||||| || |||| ||| || | || | | || Sbjct 22549 GATTCCTTCTACAGCGGCAAAGGCCACAACGCGTTCTCCATACGTAGCCTCTTTGTCCCC 22608 Query 37355 AATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTT 37414 | |||| | ||| || ||||| || ||||| || |||||||| || || Sbjct 22609 AGTCCAGCGCAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATCGTTTCAATAGCATT 22668 Query 37415 TAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACAT 37474 |||||| | | | |||| | |||| | || ||||| ||||| || ||| ||||| Sbjct 22669 GAAGAGATATTCTCTTTCCTTGGGATCTTTAATGTAAGTGTCAATAAGGGGACTGTACAT 22728 Query 37475 TTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAA 37534 ||||||||| || ||||| || || || || || ||||| ||||| | || || | | Sbjct 22729 TTCAGAGTGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAAC 22788 Query 37535 TTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGC 37594 |||||| || | ||| | || | ||||| ||||| ||||| |||||||| ||||| Sbjct 22789 TTGAACTTCTTGGCTAAATCGCTCCACCAAGTTCTCATTGACTATGCCATCACTCGCTGC 22848 Query 37595 AAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC 37633 ||||||||| ||||||| |||||||||||| ||||| Sbjct 22849 AAAGAAAGCCAGAACATGAGATATAAAATGTCTCTCATC 22887 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||| |||||||| | ||||| || || ||||| | || || || |||||||||||||| Sbjct 22128 CATGACTCCCATCCTCTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTC 22187 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATT 36964 |||||| ||||||||||| | ||||| ||||| Sbjct 22188 TAGTGAGATATTTTCCATGCAGTCAAACGGATT 22220 >seq18 Length=146158383 Score = 150 bits (166), Expect = 2e-31 Identities = 310/456 (68%), Gaps = 10/456 (2%) Strand=Plus/Plus Query 37180 CAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT-CCT 37238 |||| || || |||||||| || ||||| || || | ||||| ||||| ||| || Sbjct 66703356 CAAAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAGCTCATTGGAAAAATGTAAGGCCC 66703415 Query 37239 GGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAA-GAAAAT 37297 ||||| | || ||| || | ||| ||||| | ||||||||| |||||||| ||| || Sbjct 66703416 GGCATCAGTCCCTGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAAGAAGAT 66703475 Query 37298 ACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAAT 37357 |||| || || ||||| || |||| ||| | | || | | || | | Sbjct 66703476 TGCTTCTACCGCGGCAAAGGCCACAACTCGTTCTGCATATGTAGCTTCTTTGTCCCCAGT 66703535 Query 37358 CCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAA 37417 ||| | | ||| || ||||| |||| || |||||||||| || || || Sbjct 66703536 CCAATGCAAGGCCCAGTCAGCCTTCT------CACAGGCA-TTGTTTCAATAGCATTGAA 66703588 Query 37418 GAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTC 37477 ||| | | | |||||| | |||| | || ||||| ||||| || | ||||||||||| Sbjct 66703589 AAGATATTCTCTTTCTTTGCGATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTT 66703648 Query 37478 AGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTG 37537 |||||| || || || | | || || |||| |||||| | ||| || | | ||| Sbjct 66703649 AGAGTGTATGCTTCTCATGCCAGTTTGGAAGCCAT-AAAACAGCCAGCCTCTGTAACTTG 66703707 Query 37538 AACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAA 37597 || || | ||| | || | |||||| |||| | ||| |||||||| |||||||| Sbjct 66703708 AATTTCTTGGCTAAATCGCTCCACCAAGTTTGCATTGAGTATGCCATCACTTGCTGCAAA 66703767 Query 37598 GAAAGCAAGAACATATTTTATAAAATGTCTTTCATC 37633 |||||| |||| | |||||||||||| ||||| Sbjct 66703768 GAAAGCCAGAATGTGAGCTATAAAATGTCTCTCATC 66703803 >seq6 Length=112758220 Score = 96.9 bits (106), Expect = 4e-15 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||| ||||||||| | ||||| || || ||||| | || || || |||||||||||||| Sbjct 9090347 CATGACTCCCATTCTCTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTC 9090406 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATT 36964 |||||| ||||||||||| || ||||| ||||| Sbjct 9090407 TAGTGAGATATTTTCCATGAAGTCAAACGGATT 9090439 >seq5 Length=114734182 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||| |||||||| | ||||| || || ||||| | || || || |||||||||||||| Sbjct 21263880 CATGACTCCCATCCTCTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTC 21263821 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATT 36964 |||||| ||||||||||| || ||||| ||||| Sbjct 21263820 TAGTGAGATATTTTCCATGAAGTCAAACGGATT 21263788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592293388678480