Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq14 89.7 4e-13 >seq14 Length=171410997 Score = 89.7 bits (98), Expect = 4e-13 Identities = 122/170 (72%), Gaps = 4/170 (2%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || | |||||||||||| || ||||| || ||||| || | ||| | |||| Sbjct 86690319 AACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTC----AAAGTATGGCCATCT 86690264 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 | || ||||| || ||| | ||||| | ||| ||||| || ||||| |||| |||| Sbjct 86690263 TTCAGCTGCTTGCCAGCACAGATCAACCTCTGCTGATCAGGAGGAATTCCTTTCTTATTC 86690204 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAG 101427 || || || |||||| |||||| |||||| || | ||| || ||||| Sbjct 86690203 TGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACCTCAAG 86690154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396263128668834