Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq22 120 2e-22 seq14 104 2e-17 >seq22 Length=147524369 Score = 120 bits (132), Expect = 2e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || |||| || | |||||||| ||| || ||| ||| ||||||| ||||| ||||| Sbjct 124974693 CCACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAANGTTGTAGTCAGAC 124974634 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | || | || |||| ||||||||| ||||| ||||||| ||| ||||| | ||| Sbjct 124974633 AAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 124974574 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || ||||| || ||||| |||||| | | || || || | || ||| Sbjct 124974573 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACC 124974514 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || | ||| || ||||| ||||| | || || ||||| |||||||||||| Sbjct 124974513 TCGAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACAAAGATCTGCATCGTG 124974463 >seq14 Length=171410997 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 ||| |||| ||| | ||| ||| |||||||| ||||| ||||| | | | || || Sbjct 137735177 CAATACCAGATGAAAGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCTATC 137735236 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| ||||||||| ||||| ||||| | ||| ||||| | |||| || ||||| || Sbjct 137735237 TTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 137735296 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 |||| |||||| | | || ||||| | || ||||| | ||| || || Sbjct 137735297 CTGGGTCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACCTCAAGCGTGATGGT 137735356 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 ||| ||||| | || || |||||||||||||| ||| Sbjct 137735357 TTTCCCCGTAAGGGTCTTCACAAAAATCTGCATTGTG 137735393 Score = 102 bits (112), Expect = 6e-17 Identities = 155/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||||| ||| || ||| ||| |||||||| ||||| ||||| | | | | | || Sbjct 64263842 CAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCAGCCATC 64263901 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| ||||||||| ||||| ||||| | ||| ||||| | || || ||||| || Sbjct 64263902 TTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAAGAGCAAGTCCTTCCTTATC 64263961 Query 48674 GCTA-ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCG 48732 ||| ||||| |||||| | | || ||||| | || || || | || || | Sbjct 64263962 -CTAGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACTTCGAGCGAGATGG 64264020 Query 48733 TTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 ||| ||||| | || || |||||||||||||||||| Sbjct 64264021 GTTTCCCCGTAAGGGTCTTCACAAAAATCTGCATCGTG 64264058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380922919855326