Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2669 185 2e-41 seq23 161 2e-34 seq22 100 5e-16 seq18 89.7 1e-12 >seq2669 Length=49141 Score = 185 bits (204), Expect = 2e-41 Identities = 557/847 (66%), Gaps = 25/847 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || || || |||| |||||||||||||||||||| || || | ||||| || || Sbjct 22143 CTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAGATATTTTC 22202 Query 47899 CATGAAGAGGAAGGGGTTGGGTG-TGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCA 47957 |||| || || || || | | | | | | || | | |||| || |||||| Sbjct 22203 CATGCAGTCAAACGGATTTTCTACTCTGAAAATCTTGT-TAAAACCCAGCT---CCAGCA 22258 Query 47958 GGTGA---TCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGA 48014 | || || || |||| || || | ||| | ||| ||||| || |||| Sbjct 22259 TAAGCCTGTCGGCCACAAACTCAATATACTGCTTCATCAAAGTGCAATTCATTCCGATGA 22318 Query 48015 GGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAA 48074 | ||||||||| |||| | ||| ||||||| ||||||| ||| | | | Sbjct 22319 GCTTCACGGGCAAGGCCTCCGGGAGGAACTCCTGCTCTATCCTAACG---TTGGTGATTA 22375 Query 48075 TCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGG 48134 ||| | || | ||| | || |||| |||||||||| | | || ||||| Sbjct 22376 TCTCTCTGACCCTCTGCTCCGCTGGCTTGTGTACCAGGTGCTTGA---ACATCAGGCAGG 22432 Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194 ||||||| | ||| || || ||||| | || || ||| | ||||| || || || | Sbjct 22433 CAAAGTCACAGTGTAAACCCTCGTCTCTACTAATAAGCTCATTGGAAAATGTAAGGCCCG 22492 Query 48195 GCATGACCCCCCTCTGT-TTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 |||| | ||||| | | ||||||||||| || | || ||||| || || |||||||| Sbjct 22493 GCATCAGCCCCCCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATT 22552 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313 || || || || || || || | | ||||| | | ||| | ||||| || Sbjct 22553 CCTTCTACAGCGGCAAAGGCCACAACGCGTTCTCCATACGTAGCCTCTTTGTCCCCAGTC 22612 Query 48314 CAG-GAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAA 48372 ||| | ||| |||||||| ||||||||||| | || |||||||| || || || ||| Sbjct 22613 CAGCGCAAG-GCCCAGTCAGCCTTCTTCTTCACACAAGGCATCGTTTCAATAGCATTGAA 22671 Query 48373 GAGCTTCTTGCACTCACCTGCG-TCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACA 48428 ||| | | | || | || | || || || || | | || | | ||||| Sbjct 22672 GAGATATTCTCTTTC-CTTGGGATCTTTAATGTAAGTGTCAATAAGGGGACT---GTACA 22727 Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 | |||||||| | || || || || || ||||| || ||||| | |||||| | Sbjct 22728 TTTCAGAGTGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAA 22787 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 | || |||||| | |||| ||||| || |||||||||||||| ||||| || | Sbjct 22788 CTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTCTCATTGACTATGCCATCACTCGCTG 22847 Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGC 48608 ||||||| || || ||||| | ||||| | ||| | | | | ||||| | |||| Sbjct 22848 CAAAGAAAGCCAGAACATGAGATATAAAATGTCTCTCATCGGGTTTCAGAGCCTCCCAGT 22907 Query 48609 CCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTT 48668 ||| | || ||| |||||||| || || ||||||| ||||| || ||||| | Sbjct 22908 GCTGAATATCCTTGGAAAGGTCCACCTCCTCGGCAGTCCAAAAGGAGGCCTCGGCTTTCT 22967 Query 48669 TGTACAT 48675 ||||||| Sbjct 22968 TGTACAT 22974 >seq23 Length=120012414 Score = 161 bits (178), Expect = 2e-34 Identities = 181/240 (75%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 241390 CTGACAGCCTTGGC--ACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCC 241447 ||| ||||| | || ||||| | || ||||| ||| ||||| || ||||| || ||| Sbjct 76324100 CTGGCAGCCGTTGCTGACATGGGTCAT--GACCTTCTGCTTGAGCTGCGCCACTTGCTCC 76324157 Query 241448 CGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTC 241507 || || | | || | | | ||||| || ||||| |||| |||||| |||||| || Sbjct 76324158 CGTAGGAGGCCGGCAGCACTCGACAGCCCCGCGTTCTCAGCCTTGAGTGTCTTCACCTTG 76324217 Query 241508 TCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGG 241567 |||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| | | Sbjct 76324218 TCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGCCTG 76324277 Query 241568 TTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| || | ||| || ||| | |||||||| |||||||| ||||||| ||| || ||| Sbjct 76324278 TTCCGCAGCCGCTTTCGCTCCACTTTGATGCGCTCCTGGTCTTCCATGTTGATGGGGGAC 76324337 Score = 145 bits (160), Expect = 1e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||| | ||||||||| || |||||||| || ||||| | | ||||| | ||| Sbjct 62918191 AGGACTTTCTGTTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTGGCGGTGGACGCCAGC 62918132 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | ||||| ||| |||||||||||||| |||| ||| || ||||| Sbjct 62918131 TCGGTGTTCTGGCTTTTGAGGGTCTTGACTTTCTCCTCCAGGCGCGAGATACGCTCCAGC 62918072 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| ||||||||||| ||| || | |||||| || || ||||| || ||||||||| Sbjct 62918071 TTGCGCTTGCGGCATTTGGAGGCGGCGATGCGGTTGCGCAGCCTCTTGCGCTCCGCCTTG 62918012 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 |||||||| || ||||||||||| || ||| Sbjct 62918011 ATGCGTTCTTGCGTGTCCATGTCGATGGGCGAC 62917979 >seq22 Length=147524369 Score = 100 bits (110), Expect = 5e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||| | || || || ||||||||||||||| |||||| ||||||||||| ||| Sbjct 105164792 GTGTACTCTACTATTTCTGTACACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGG 105164733 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| ||| ||||| |||||||||||||| |||| |||||||| |||| Sbjct 105164732 TTGCTCTTCCGGTTACAGGAATCTTTGTAGAGCATGTATGGGGTACCGGTCTCCGTCTGG 105164673 Query 213648 GAC 213650 ||| Sbjct 105164672 GAC 105164670 >seq18 Length=146158383 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||| ||||| ||||| || ||||| || | ||||| |||| ||| Sbjct 87272930 TTCACTTTTTCCTCTAGCCGAGCGATCCGCTCCAGCTTCCTTTTCCGGCACTTGGAGGCG 87272989 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | ||||||||||| || ||||| |||||||||| Sbjct 87272990 GCAATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCCTGAGACTCCATGTCG 87273049 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 87273050 ATGGGGGAC 87273058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931495981166080