Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2669 170 4e-37 seq6 98.7 2e-15 seq18 89.7 1e-12 seq8 89.7 1e-12 seq5 84.2 4e-11 >seq2669 Length=49141 Score = 170 bits (188), Expect = 4e-37 Identities = 408/604 (68%), Gaps = 30/604 (5%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 ||||| ||| ||||||||||||| || | ||| ||||| ||||| ||| | || Sbjct 22986 GATATCTGGCAGATGTACAAGAAAGCCGAGGCCTCCTTTTGGACTGCCGAGGAGGTGGAC 22927 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCT--ATCCAAAGACGAGCAGCATTTT---- 25587 || ||||||| || | |||| | ||||| | || || ||| |||||| Sbjct 22926 CTTTCCAAGGATATTCAGCACTGGGAGGCTCTGAAACCC--GATGAGAGACATTTTATAT 22869 Query 25588 CTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGC 25647 |||| || | |||| ||||||||||| |||||| ||||| || ||||| || Sbjct 22868 CTCATGTTC----TGGCTTTCTTTGCAGCGAGTGATGGCATAGTCAATGAGAACTTGGTG 22813 Query 25648 GAGAGATTCACCAGGGAAGTGCAG--TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGA 25705 ||| |||| | | ||||| || ||| |||||| |||||||| || ||||| | Sbjct 22812 GAGCGATTTAGCCAAGAAGTTCAAGTTACA--GAGGCCCGCTGTTTCTATGGCTTCCAAA 22755 Query 25706 TGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTA 25762 | ||||| ||||| | |||||||| |||| || | || || || ||||||| Sbjct 22754 TTGCCATGGAAAACATACACTCTGAAATGTA---CAGTCCCCTTATTGACACTTACATTA 22698 Query 25763 CAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGA 25822 ||| | || ||||| || || ||| || || || || | | |||| Sbjct 22697 AAGATCCCAAGGAAAGAGAATATCTCTTCAATGCTATTGAAACGATGCCTTGTGTGAAGA 22638 Query 25823 GGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCG-CTACGTTTGGCGAGCGG 25881 |||||| |||||| || |||| | | || || | |||||| ||| || || Sbjct 22637 AGAAGGCTGACTGGGCCTTGCGCTGGA-CTGGGGACAAAGAGGCTACGTATGGAGAACGC 22579 Query 25882 CTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTC 25941 | || |||||||| ||||| || || ||||| || |||||| ||||| | || ||| Sbjct 22578 GTTGTGGCCTTTGCCGCTGTAGAAGGAATCTTCTTTTCCGGTTCTTTTGCATCGATATTC 22519 Query 25942 TGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTAC-TTTTCCAACGAGCTCATCAGCA 25999 ||||||||| | |||| | ||| |||||| ||| |||||||| ||||| || || | Sbjct 22518 TGGCTCAAGAAACGGGGGGCTGATG-CCGGGCCTTACATTTTCCAATGAGCTTATTAGTA 22460 Query 26000 GGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACA 26059 | ||||||||| | ||| | || |||||||||||| | | || | ||| || | |||| Sbjct 22459 GAGACGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTTCAAG---CACCTGGTACACA 22403 Query 26060 AACC 26063 | || Sbjct 22402 AGCC 22399 >seq6 Length=112758220 Score = 98.7 bits (108), Expect = 2e-15 Identities = 134/181 (74%), Gaps = 7/181 (4%) Strand=Plus/Plus Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 || |||||||| | || || || ||||| || |||||| ||||| | | |||||| Sbjct 9090602 GTGGCCTTTGCCACCGTAGAAGGAATCTTCTTTTCCGGTTCTTTTGCATCAAGATTCTGG 9090661 Query 25945 CTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTAC-TTTTCCAACGAGCTCATCAGCAGGG 26002 |||||| | | |||||| ||| |||||| ||| ||||||| ||||| || ||||| | Sbjct 9090662 CTCAAG-AAACGGGGACTGATG-CCGGGCCTTACACTTTCCAATGAGCTTATTAGCAGAG 9090719 Query 26003 ACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAAC 26062 |||||||| | ||| | || |||||||||||| | | || | ||| || | ||||| | Sbjct 9090720 ACGAGGGTTTACACTGGGACTTTGCCTGCCTGATGTTCAAG---CACCTGGTACACAAGC 9090776 Query 26063 C 26063 | Sbjct 9090777 C 9090777 >seq18 Length=146158383 Score = 89.7 bits (98), Expect = 1e-12 Identities = 146/206 (71%), Gaps = 7/206 (3%) Strand=Plus/Minus Query 25864 GCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGC-GG 25922 ||||| | || || || | || |||||||| || || || | ||||| || | || Sbjct 66703520 GCTACATATGCAGAACGAGTTGTGGCCTTTGCCGCGGTAGAAGCAATCTTCTTTTTCTGG 66703461 Query 25923 TTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTAC--TTT 25980 ||| ||||| | || |||||||||||| | |||| ||| |||||| ||| ||| Sbjct 66703460 TTCTTTTGCATCGATATTCTGGCTCAAGAAACAGGGACTGATG-CCGGGCCTTACATTTT 66703402 Query 25981 TCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 ||||| ||||| || ||||| ||||||||| | ||| | || |||| || |||| | | | Sbjct 66703401 TCCAATGAGCTTATTAGCAGAGACGAGGGTTTACACTGGGACTTTGTCTACCTGATGTTC 66703342 Query 26041 ACGGGCCACTTGCTCCACAAACCTTC 26066 | | ||| || | ||||| || || Sbjct 66703341 AAG---CACCTGGTACACAAGCCATC 66703319 >seq8 Length=97450195 Score = 89.7 bits (98), Expect = 1e-12 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| ||||||||||||||||| || || || ||| || || ||||| || || |||| Sbjct 32799416 TGGTGGCCTTTGCTGCTGTGGAAGGAATTTTCTTCTCTGGATCATTTGCTGCAATATTCT 32799357 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 |||| ||| ||| || |||||| || ||| ||||| || || || |||||||||| Sbjct 32799356 GGCTAAAGAAGAGAGGCCTCATGCCTGGACTGACTTTTTCAAATGAACTGATCAGCAGGG 32799297 Query 26003 ACGA 26006 | || Sbjct 32799296 ATGA 32799293 >seq5 Length=114734182 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 || |||||||| || || || || ||||| || |||||| ||||| | || |||||| Sbjct 21262714 GTGGCCTTTGCCGCCGTAGAAGGAATCTTCTTTTCCGGTTCTTTTGCATCGATATTCTGG 21262773 Query 25945 CTCAAGCAGAAGGGGACCATGCCCGGGCTGTAC-TTTTCCAACGAGCTCATCAGCAGGGA 26003 |||||| | |||| ||| |||||| ||| |||||||| ||||| || ||||| || Sbjct 21262774 CTCAAGAAACGGGGGCTGATG-CCGGGCCTTACATTTTCCAATGAGCTTATTAGCAGAGA 21262832 Query 26004 CGAGG 26008 ||||| Sbjct 21262833 CGAGG 21262837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928808087409280