Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_019934.1 Length=39012 Score E Sequences producing significant alignments: (Bits) Value seq214 86.0 2e-12 >seq214 Length=10749 Score = 86.0 bits (94), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 36834 AACACCGAAATGTACCGGCAGAACTGATGCTCGCCGCGGAGCTTTTCCGCCGCGCGCGCT 36893 ||||||||||| | |||||| |||| |||| | |||||| || || ||||||||| | Sbjct 989 AACACCGAAATATGCCGGCAATACTGCCGCTCTCGGCGGAGTTTCTCTGCCGCGCGCTCC 1048 Query 36894 GCATAGCTGCAGATAGCCTGGCGCATCGCTTCATAGTCAGTGATTCGCTCCCCGAATGAC 36953 || || ||| | |||||| |||| | | | | |||| || | || ||||| Sbjct 1049 GCGTACTGGCACACCGCCTGGTGCATGTCCTGCAACTGCGTGACACGTTGACCAAATGAG 1108 Query 36954 CGGCTGCAGACGATTTCCTGTTTTGCCGGGGCAAACTCCTCGATCTCCAGACAGGGCTCG 37013 |||||| || ||| | |||||| ||||| | | | |||||| | ||||| | Sbjct 1109 CGGCTGACGATGATCTGCTGTTTGGCCGG---CAGCGCATCGATCGAGATGCAGGGTACC 1165 Query 37014 CCGCGCAGCTCGCGCACGGTGCGCTCCAGCACGACG 37049 ||| ||| || ||| |||||||| ||||| ||| Sbjct 1166 CCGTTCAGTTCACGCTGAGTGCGCTCGAGCACAACG 1201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124712117040056