Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq13 291 9e-74 seq9 123 3e-23 seq18 98.7 1e-15 >seq13 Length=57673148 Score = 291 bits (322), Expect = 9e-74 Identities = 663/988 (67%), Gaps = 17/988 (2%) Strand=Plus/Plus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||| ||| |||| ||| | |||||| || ||| || ||||| || Sbjct 14687862 CAGATGCTCATCCAAACACTGGATGGCATAGGGGTCAACATCCATGTCAAACTTATTGGC 14687921 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 || || ||||| | | || |||||| || ||| || | ||||| | ||| || Sbjct 14687922 AAAAAGGTGGTGTTGGCGC---AGCATCCAGCTCAAGTCACCAGCTCCGAAGATGCACAC 14687978 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 || || | ||| || || ||| || || || | || || || | || || ||||| Sbjct 14687979 AGAGCGCACGTGGACTCCAGCGCACGGTGGATAAGGGGCACCGTTGGAAACATCGCCTTC 14688038 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 | ||||||||||||| |||||||| || || || | |||||| || ||| || |||| Sbjct 14688039 GAAGTACTGCCACTTGACAAACCTAGCAATGGCATTCATGTCTGACAAGTCATACTTGTG 14688098 Query 160292 -CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTT 160350 | | ||||||||| ||| || || |||| || | || | ||||||||| ||| | Sbjct 14688099 GCTTGAGGGGAACGA-ACCAGGGACTTCGGGGATCCTTTGGATGGTGGCCCAGAGGAACT 14688157 Query 160351 CGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGAT--TAACCTGTCCCG 160408 | || |||||||| ||||||| | ||||||||| |||| | || | | | | || Sbjct 14688158 CATCTGGGCTGTATGTGTCCTGTGCCCATTCCATCAACTTTTGAATATTTTCATTTTCC- 14688216 Query 160409 CAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGG 160468 || |||| || || || | || || ||||| || ||||| || || | || Sbjct 14688217 -AGCACGTAGCCTACATATTCCCTACTGACCACGAAGTAGGCACTGCCTGAAAAGAGAGG 14688275 Query 160469 ---TATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCAC 160525 | || || || || | ||||| | || ||||| || | || | || Sbjct 14688276 AGTTTTGAGTGGGGGTGGTG---CTTTGCCTATTCCAGTGTTGACCAGCTTCCCATCGAC 14688332 Query 160526 CAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAG 160585 | | || || || ||||| || | ||||| || ||||| || || || || Sbjct 14688333 AACGGTGTATCTTTTTTTCCATCTCTCTTCCTTGTTGGGAGGCATCTTCTCAGTTTCCAG 14688392 Query 160586 ACTGTTGGCACC-GTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCG 160644 ||||| | || || |||| | || |||| | |||| || || ||||| || || | | Sbjct 14688393 GCTGTTTTCCCCTGTGGAGC-ACTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAATGG 14688451 Query 160645 GAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGT 160704 | || || |||| || | || |||| ||||||||| || || ||| || ||||| Sbjct 14688452 GGAAATCCATACCACAGAGATTGATCAAGTACTTCCAGTTTGCATTCATTCTGTACAGGT 14688511 Query 160705 CCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTA 160764 || ||||||| || | || |||| || || |||||||| || || || || |||| | Sbjct 14688512 CCTTCATGCAGTTGAGGTCAGCCTTAACCCGACTCCAGGACGCATAAACAACACTCTCCA 14688571 Query 160765 GTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGA 160824 | |||||||||||||| ||||| || || || |||| ||| |||||| || | Sbjct 14688572 ACTGGCTGGCCACAAAGACATTATCAAAGCAGGATGCGATGCCCTGCACCGCGTCTAAAA 14688631 Query 160825 ACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGG 160884 | | | || || |||| ||||||||| | ||| || | ||||||||| ||||||| Sbjct 14688632 AGAATTCCTCTGCTTTTCTGTCCACGTGAATGCAGTAGAAATTCTGAGGCATATAGATGG 14688691 Query 160885 CCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCG 160944 |||| || | ||| || | ||| || ||||||||||| | |||||| || || || || | Sbjct 14688692 CCCTCAGGAGCCTGTCAAGCATTTCAATCTTATGATGAACCACGATGGAATATGCAATTG 14688751 Query 160945 GAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAAT 161004 |||| | ||| || ||| || | | | | || || || ||| |||| ||| Sbjct 14688752 GAAAGCCTACCTCTTCTTTACTAAGAGGCTCCACAATATATTTGCGTGTCCTGATGAAAG 14688811 Query 161005 AATCACAATCCCGCGTCATGTTGATATA 161032 | ||||||| || |||||||| ||||| Sbjct 14688812 AGGCACAATCGCGGGTCATGTTTATATA 14688839 >seq9 Length=92629107 Score = 123 bits (136), Expect = 3e-23 Identities = 172/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 168150 TATAGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCAC 168209 || || || | ||| | | |||| || | ||| || || |||||||||||||| ||| Sbjct 42597123 TAGAGGGTAAGGCAAGCTGTTCCTGAGACCTTCTGAGAACCAAACGTGTTGAAGAGACAC 42597182 Query 168210 ATGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGG 168269 ||| |||| || || || |||| || || ||||| || || | ||||||| | ||| Sbjct 42597183 ATGTAGCAACCCTCATCTTCCAATGTTGTGTTCCAGAAGGTGATGCTTGAGTTCCAGAGT 42597242 Query 168270 CCCAACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTC 168329 |||| || ||| | ||| | | ||||| || | ||| || | |||||| || ||| | Sbjct 42597243 CCCAGCTCCGTGACGTTTATCCTGTCTTTGTAGGCAGGCTGGATTACAACCCCATGGGTT 42597302 Query 168330 TCGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATC 168389 | |||| ||||| ||||||| || ||||| ||| || | |||||||| || || ||| Sbjct 42597303 TTGCTGTAGGTGACCATGTTTTCTGGGCTTACGGCTTTCTTTTTCTGCCATGTCACAATC 42597362 Query 168390 A 168390 | Sbjct 42597363 A 42597363 >seq18 Length=146158383 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291 ||||||||| ||| |||| || |||| | |||| | ||||| || |||| | | | Sbjct 20484885 AGATATTTTGCTAACTCACTGGGAGAGTTAAAATCTTCCACATGAATGAATGAATCAGCT 20484944 Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351 ||||| || || ||||| |||| || || || | || | ||||| | || || Sbjct 20484945 GGAATATAATTCTCATAGTTTTCCCTATTTGGACCCAGGACAACAGGTACTGAACCAGCC 20485004 Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411 || |||| ||||| |||||||| ||| || || ||||||||||||||||||||| Sbjct 20485005 AAAAATGCATTGTAGAGCTTTTCTGTGATATAATCTTTGTGAATTGAGTTTTCAAAAGAA 20485064 Query 176412 AAATAGAACTTACA 176425 | ||| || ||||| Sbjct 20485065 AGATAAAATTTACA 20485078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577196385411120