Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_020841.1 Length=40803 Score E Sequences producing significant alignments: (Bits) Value seq2171 80.6 7e-11 >seq2171 Length=2622 Score = 80.6 bits (88), Expect = 7e-11 Identities = 116/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 13061 GCACTGTCACAGCTTAACCGTAGCTTAGAGAGCCGACCAAACAAACGGCCCATCATGAGC 13120 || ||||| ||| | ||||| ||| | ||| || | ||||||| || ||| | Sbjct 1550 GCGCTGTCGCAGTTGAACCGAAGCCTGGAGCAGCGTGCCGACAAACGTCCGGTCAACTCC 1609 Query 13121 GACCTAAAAGAGTCAGGGGCCATTGAGGAAAACGCTGACGTGATTATGTTCCTGTACCGC 13180 ||||| ||||| || |||| ||| | | || ||| ||||||||||| | ||||| Sbjct 1610 GACCTGCGTGAGTCTGGCTCCATCGAGCAGGATGCCGACCTGATTATGTTCATCTACCGT 1669 Query 13181 GATGAGGTTTATAACGAAAACTCGGACCAAAAAGGTATTGCTGA 13224 |||||||||||| |||| ||| || | ||||| ||||| || Sbjct 1670 GATGAGGTTTATCACGAGAACAGCGATCTGAAAGGGATTGCCGA 1713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130443101840660