Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq8 116 7e-21 seq14 111 3e-19 seq22 107 3e-18 >seq8 Length=97450195 Score = 116 bits (128), Expect = 7e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 |||||||| | || | ||| || ||| || ||||| || || || | ||| || Sbjct 30032866 ACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATCTTCC 30032925 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | || || || ||||| || | |||||| ||||||||||| |||||||| ||||| || Sbjct 30032926 AGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 30032985 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| |||| ||||| || || | ||||| || || || || ||||| Sbjct 30032986 ATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTC 30033045 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || ||||| || ||||| Sbjct 30033046 CCTGTAAGGGTCTTCACAAAGATCTGCAT 30033074 >seq14 Length=171410997 Score = 111 bits (122), Expect = 3e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 193151 TACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTC 193210 ||||||||| || || | ||| || ||| || ||||| || || || | ||| || Sbjct 137735180 TACCAGATGAAAGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCTATCTTC 137735239 Query 193211 TAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTG 193270 | || || || ||||| || | ||||| ||||||||||| |||||||| ||||| || Sbjct 137735240 CAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTG 137735299 Query 193271 TATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTT 193330 | |||| |||| |||| ||||| || || | ||||| || || || || ||||| Sbjct 137735300 GGTCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACCTCAAGCGTGATGGTTTT 137735359 Query 193331 ACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || ||||| || |||||| Sbjct 137735360 CCCCGTAAGGGTCTTCACAAAAATCTGCATT 137735390 >seq22 Length=147524369 Score = 107 bits (118), Expect = 3e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 |||||||| | || | ||| || || || ||||| || || || | ||| || Sbjct 124974675 ACCAGATGAAGGGTGGACTCCTTTTGAANGTTGTAGTCAGACAAAGTCCGGCCATCTTCC 124974616 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | || || || ||||| || | |||||| ||||||||||| |||||||| ||||| || Sbjct 124974615 AGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 124974556 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| |||| ||||| || || | ||||| || || || || ||||| Sbjct 124974555 ATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTC 124974496 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || ||||| || ||||| Sbjct 124974495 CCCGTAAGGGTCTTCACAAAGATCTGCAT 124974467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899618841159840