Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2669 120 4e-22 seq8 93.3 6e-14 seq22 89.7 8e-13 >seq2669 Length=49141 Score = 120 bits (132), Expect = 4e-22 Identities = 228/333 (68%), Gaps = 6/333 (2%) Strand=Plus/Plus Query 18373 ACACGGTATACTCTCTATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATA 18432 ||| || || | || |||||||| || | || ||| |||| |||| |||||| || || Sbjct 22645 ACAAGGCATCGTTTCAATAGCATTGAAGAGATATTCTCTTTCCTTGGGATCTTTAATGTA 22704 Query 18433 AGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACT 18492 |||||| || | | ||||||||||| |||||| ||||||| || || || || | Sbjct 22705 AGTGTCAATAAGGGGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATTTGGAAGCC 22764 Query 18493 ATAAAACGATCTAGCCTCGGGATATTGAA--TC-TCGCTATAAAATCTTTCTACCAAATT 18549 ||| || | | ||||| | | ||||| || | ||| ||||| || ||||| || Sbjct 22765 ATAGAAACAGCGGGCCTCTGTAACTTGAACTTCTTGGCT---AAATCGCTCCACCAAGTT 22821 Query 18550 CTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTT 18609 |||||| ||||| || ||| | ||| || || |||| ||||| || |||||| | Sbjct 22822 CTCATTGACTATGCCATCACTCGCTGCAAAGAAAGCCAGAACATGAGATATAAAATGTCT 22881 Query 18610 TTCATTATCCTTGAGATTGTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGA 18669 |||| || ||| | ||| | | ||||| || || || || || || || | Sbjct 22882 CTCATCGGGTTTCAGAGCCTCCCAGTGCTGAATATCCTTGGAAAGGTCCACCTCCTCGGC 22941 Query 18670 TGTCCAAAAAGATGATTCGGCCTGTTTGTACAT 18702 |||||||| || | ||||| | |||||||| Sbjct 22942 AGTCCAAAAGGAGGCCTCGGCTTTCTTGTACAT 22974 >seq8 Length=97450195 Score = 93.3 bits (102), Expect = 6e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | || || ||||| || || | || || ||| || Sbjct 30033074 ATGCAGATCTTTGTGAAGACCCTTACAGGGAAAACCATCACGCTCGAGGTTGAACCCTCG 30033015 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || || || || || ||||| ||||| || ||||| || || Sbjct 30033014 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 30032955 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| |||| | ||| ||||||||||| |||||| | | ||||| || || || || Sbjct 30032954 CAGAGACTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGGACTTTGTCTGACTACAAC 30032895 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 || || ||| ||| | || |||||| | ||||| ||| | | || |||| Sbjct 30032894 AT-TCAAAAGGAGTCCACCCTTCATCTGGTGTTGAGACTTCGGGGTGGTG 30032846 >seq22 Length=147524369 Score = 89.7 bits (98), Expect = 8e-13 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | || || ||||| || || | || || ||| || Sbjct 124974467 ATGCAGATCTTTGTGAAGACCCTTACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCG 124974526 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || || || || || ||||| ||||| || ||||| || || Sbjct 124974527 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 124974586 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| |||| | ||| ||||||||||| |||||| | | ||||| || || || || Sbjct 124974587 CAGAGACTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGGACTTTGTCTGACTACAAC 124974646 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 | || ||| ||| | || |||||| | ||||| ||| | | || |||| Sbjct 124974647 NT-TCAAAAGGAGTCCACCCTTCATCTGGTGTTGAGACTTCGGGGTGGTG 124974695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731843072759200