Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq8 122 2e-22 seq14 120 6e-22 seq22 118 2e-21 >seq8 Length=97450195 Score = 122 bits (134), Expect = 2e-22 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | || | ||| ||| || || || || |||| Sbjct 30032847 ACCACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGA-ATGTTGTAGTCAG 30032905 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || || |||| |||| || |||||||||||||| | |||||| |||||||| | Sbjct 30032906 ACAAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAG 30032965 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || |||||||| ||||| || || | ||| | Sbjct 30032966 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAA 30033025 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | || || || |||||||| || || | || || | ||| |||||||| Sbjct 30033026 CCTCGAGCGTGATGGTTTTCCCTGTAAGGGTCTTCACAAAGATCTGCAT 30033074 >seq14 Length=171410997 Score = 120 bits (132), Expect = 6e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| ||| | ||||| | ||| || || | ||| ||| || || || || |||| Sbjct 137735162 ACCACCCTGAAGTCTCAATACCAGATGAAAGGTGGACTCCTTTTGA-ATGTTGTAGTCAG 137735220 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || || ||| |||| || |||||||||||||| | ||||| |||||||| | Sbjct 137735221 ACAAAGTCCGGCTATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAG 137735280 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || | || |||||||| ||||| ||||| | ||| | Sbjct 137735281 GAATTCCTTCCTTATCCTGGGTCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAA 137735340 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 | || || || |||||||| || || | || || | ||| ||||||||| Sbjct 137735341 CCTCAAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACAAAAATCTGCATT 137735390 Score = 91.5 bits (100), Expect = 3e-13 Identities = 135/190 (71%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || || || || ||||| || || | |||| |||| || ||||||||||||| Sbjct 64263866 CTTTTGA-ATGTTGTAGTCAGACAAAGTCCAGCCATCTTCCAGCTGCTTACCAGCAAAGA 64263924 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | | ||||| |||||| | | | |||||| ||||| | || || |||||||| Sbjct 64263925 TCAGCCTCTGCTGATCAAGAGCAAGTCCTTCCTTATCCTAGATCTTGGCCTTTACATTTT 64263984 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 ||||| ||||| | ||| ||||| || | |||| ||| || || | || || | || Sbjct 64263985 CTATAGTGTCTGAGGGTTCAACTTCGAGCGAGATGGGTTTCCCCGTAAGGGTCTTCACAA 64264044 Query 192527 ATATCTGCAT 192536 | |||||||| Sbjct 64264045 AAATCTGCAT 64264054 >seq22 Length=147524369 Score = 118 bits (130), Expect = 2e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | || | ||| ||| || | || || |||| Sbjct 124974694 ACCACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGA-ANGTTGTAGTCAG 124974636 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || || |||| |||| || |||||||||||||| | |||||| |||||||| | Sbjct 124974635 ACAAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAG 124974576 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || |||||||| ||||| || || | ||| | Sbjct 124974575 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAA 124974516 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | || || || |||||||| || || | || || | ||| |||||||| Sbjct 124974515 CCTCGAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACAAAGATCTGCAT 124974467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984440115638700