Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq8 113 8e-20 seq22 109 1e-18 seq14 109 1e-18 >seq8 Length=97450195 Score = 113 bits (124), Expect = 8e-20 Identities = 167/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | || | ||| || ||| || Sbjct 30032838 TTTCTTAGCACCACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTT 30032897 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| || | || |||| || ||||||||||| || | |||||| || Sbjct 30032898 GTAGTCAGACAAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTCTGCTG 30032957 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| |||||| || || Sbjct 30032958 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGA 30033017 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | ||| || || || || |||||||| || || | || || | || |||||||| Sbjct 30033018 GGGTTCAACCTCGAGCGTGATGGTTTTCCCTGTAAGGGTCTTCACAAAGATCTGCAT 30033074 >seq22 Length=147524369 Score = 109 bits (120), Expect = 1e-18 Identities = 166/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | || | ||| || || || Sbjct 124974703 TTTCTTAGCACCACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAANGTT 124974644 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| || | || |||| || ||||||||||| || | |||||| || Sbjct 124974643 GTAGTCAGACAAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTCTGCTG 124974584 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| |||||| || || Sbjct 124974583 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGA 124974524 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | ||| || || || || |||||||| || || | || || | || |||||||| Sbjct 124974523 GGGTTCAACCTCGAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACAAAGATCTGCAT 124974467 >seq14 Length=171410997 Score = 109 bits (120), Expect = 1e-18 Identities = 167/238 (70%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| ||||| ||||| | ||| || || | ||| || ||| || Sbjct 137735153 TTTCTTAGCACCACCCTGAAGTCTCAATACCAGATGAAAGGTGGACTCCTTTTGAATGTT 137735212 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| || || |||| || ||||||||||| || | ||||| || Sbjct 137735213 GTAGTCAGACAAAGTCCGGCTATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTG 137735272 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || | || |||||||| |||||| ||||| Sbjct 137735273 ATCAGGAGGAATTCCTTCCTTATCCTGGGTCTTGGCCTTTACATTTTCTATAGTGTCTGA 137735332 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 | ||| || || || || |||||||| || || | || || | || ||||||||| Sbjct 137735333 GGGTTCAACCTCAAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACAAAAATCTGCATT 137735390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905100224499600