Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2669 96.9 1e-14 >seq2669 Length=49141 Score = 96.9 bits (106), Expect = 1e-14 Identities = 259/388 (67%), Gaps = 11/388 (3%) Strand=Plus/Minus Query 133085 TTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGATTTATTTTGG 133144 |||||| | || || | || || ||||||||||| || ||| | | | |||||| Sbjct 23003 TTCCCA-TCGAGTACCATGATATCTGGCAGATGTACAAGAAAGCCGAGGCCTCCTTTTGG 22945 Query 133145 ACTTCAACTGAAGTAGATTTATCCAAAGACC--CAGCCCACTGGGAAGCCCTTACTGGGG 133202 ||| | || || || | ||||| || |||| ||||||| || || | | Sbjct 22944 ACTGCCGAGGAGGTGGACCTTTCCAAGGATATTCAGC--ACTGGGAGGCTCTGAAACCCG 22887 Query 133203 ATGAAAAACATTTTATTTCT-ATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTT 133261 |||| | ||||||||| ||| ||| || | || || ||||| ||||||||||| || || Sbjct 22886 ATGAGAGACATTTTATATCTCATG-TTCTGGCTTTCTTTGCAGCGAGTGATGGCATAGTC 22828 Query 133262 CTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTT 133321 ||| || || | || |||| |||||||||| | | || ||||| || Sbjct 22827 AATGAGAACTTGGTGGAGCGATTTAGCCAAGAAGTTCAAGTTACAGAGGCCCGCTGTTTC 22768 Query 133322 TATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCTAATTGAT 133381 ||||| | || ||||| |||||||| || || ||| | || | | || ||||| Sbjct 22767 TATGGCTTCCAAATTGCCATGGAAAACATACACTCTGAAATGTACAGTCCCCTTATTGAC 22708 Query 133382 ACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATT--AGCGAATTTC 133439 |||||||| |||||| || | | | | || ||||| || ||| | ||| | | Sbjct 22707 ACTTACATTAAAGATCCCAAGGAAAGAGAATATCTCTTCAATGCTATTGAAACGA--TGC 22650 Query 133440 CTTGTATTAAAAAGAAATCTGACTGGGC 133467 ||||| | || ||||| |||||||||| Sbjct 22649 CTTGTGTGAAGAAGAAGGCTGACTGGGC 22622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471757972069594