Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq6 161 1e-33 seq4 152 6e-31 seq16 116 5e-20 seq2669 111 2e-18 >seq6 Length=112758220 Score = 161 bits (178), Expect = 1e-33 Identities = 166/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 16893829 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 16893888 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| ||| |||||| ||||||| |||| | Sbjct 16893889 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGGGACGCCTCGCCTGCGATGCGCTCGAAGA 16893948 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 16893949 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 16894008 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 |||| ||||| ||||||||||| | | || |||||| Sbjct 16894009 GCACTTGCTTCAGCACCTTGTACACGTACACCGAGTA 16894045 Score = 161 bits (178), Expect = 1e-33 Identities = 166/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 16900679 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 16900620 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| ||| |||||| ||||||| |||| | Sbjct 16900619 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGGGACGCCTCGCCTGCGATGCGCTCGAAGA 16900560 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 16900559 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 16900500 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 |||| ||||| ||||||||||| | | || |||||| Sbjct 16900499 GCACTTGCTTCAGCACCTTGTACACGTACACCGAGTA 16900463 Score = 161 bits (178), Expect = 1e-33 Identities = 166/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 16959956 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 16959897 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| ||| |||||| ||||||| |||| | Sbjct 16959896 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGGGACGCCTCGCCTGCGATGCGCTCGAAGA 16959837 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 16959836 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 16959777 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 |||| ||||| ||||||||||| | | || |||||| Sbjct 16959776 GCACTTGCTTCAGCACCTTGTACACGTACACCGAGTA 16959740 Score = 161 bits (178), Expect = 1e-33 Identities = 166/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 19574742 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 19574683 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| ||| |||||| | ||||||| |||| | Sbjct 19574682 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGGGACGCCTCGCTCGCGATGCGCTCGAAGA 19574623 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 19574622 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCCGGGT 19574563 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 |||| ||||| ||||||||||| | | || |||||| Sbjct 19574562 GCACTTGCTTCAGCACCTTGTACACGTACACCGAGTA 19574526 Score = 158 bits (174), Expect = 1e-32 Identities = 165/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | |||||||||||| ||||||||||| || | || Sbjct 19413108 GCTTGGCCAGCTCCCCCGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 19413049 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| ||| |||||| | ||||||| |||| | Sbjct 19413048 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGGGACGCCTCGCTCGCGATGCGCTCGAAGA 19412989 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 19412988 TGTCGTTCACGAACGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 19412929 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 |||| ||||| ||||||||||| | | || |||||| Sbjct 19412928 GCACTTGCTTCAGCACCTTGTACACGTACACCGAGTA 19412892 Score = 158 bits (174), Expect = 1e-32 Identities = 165/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 19426767 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 19426826 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| ||| |||||| ||||||| |||| | Sbjct 19426827 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGGGACGCCTCGCCTGCGATGCGCTCGAAGA 19426886 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 19426887 TGTCGTTCACGAACGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 19426946 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 |||| ||||| ||||||||||| | | || |||||| Sbjct 19426947 GCACTTGCTTCAGCACCTTGTACACGTACACCGAGTA 19426983 Score = 156 bits (172), Expect = 5e-32 Identities = 164/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 19517874 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 19517815 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| ||| |||||| ||||||| |||| | Sbjct 19517814 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGGGACGCCTCGCNNGCGATGCGCTCGAAGA 19517755 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 19517754 TGTCGTTNACGAANGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 19517695 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 |||| ||||| ||||||||||| | | || |||||| Sbjct 19517694 GCACTTGCTTCAGCACCTTGTACACGTACACCGAGTA 19517658 Score = 141 bits (156), Expect = 1e-27 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 19762780 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 19762839 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| ||| |||||| | ||||||| |||| | Sbjct 19762840 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGGGACGCCTCGCTCGCGATGCGCTCGAAGA 19762899 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| | ||||| |||||||||| ||| | ||| ||||||||| |||||||| Sbjct 19762900 TGTCTGTCACAAAGGAGTTCATGATGCTCATGGCCTTAGAGGAGATGCCGGTGTCGGGGT 19762959 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 |||| || || |||||||| |||||| Sbjct 19762960 GCACTTGTTTCAGCACCTTATAGATG 19762985 Score = 120 bits (132), Expect = 4e-21 Identities = 128/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 17006057 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 17005998 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| ||| |||||| | ||||||| |||| | Sbjct 17005997 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGGGACGCCTCGCTCGCGATGCGCTCGAAGA 17005938 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCC 1254511 ||||||| || ||||||||||||| ||| | |||| ||||||||| Sbjct 17005937 TGTCGTTCACGAACGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCC 17005889 Score = 102 bits (112), Expect = 1e-15 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 17209364 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 17209305 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| ||| |||||| ||||||| |||| | Sbjct 17209304 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGGGACGCCTCGCCTGCGATGCGCTCGAAGA 17209245 Query 1254463 TGTCGTTGACAAACGAGTTCA 1254483 |||||||||| ||||||||| Sbjct 17209244 TGTCGTTGACGGACGAGTTCA 17209224 >seq4 Length=117747451 Score = 152 bits (168), Expect = 6e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||| | |||||| | || Sbjct 53764079 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGCACCTCGCGGGACGTGA 53764020 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| ||| ||||||| || ||||||| |||| | Sbjct 53764019 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGGGAGGCCTCGCTGGCGATGCGCTCGAAGA 53763960 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| ||||| ||||||||||||| ||| | |||| |||||||| ||| || | Sbjct 53763959 TGTCATTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCCGGAT 53763900 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 53763899 GCACCTGCTTCAGCACCTTGTA 53763878 Score = 152 bits (168), Expect = 6e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||| | |||||| | || Sbjct 53768906 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGCACCTCGCGGGACGTGA 53768965 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| ||| ||||||| || ||||||| |||| | Sbjct 53768966 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGGGAGGCCTCGCTGGCGATGCGCTCGAAGA 53769025 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| ||||| ||||||||||||| ||| | |||| |||||||| ||| || | Sbjct 53769026 TGTCATTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCCGGAT 53769085 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 53769086 GCACCTGCTTCAGCACCTTGTA 53769107 >seq16 Length=152576986 Score = 116 bits (128), Expect = 5e-20 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 |||||||| ||| ||| | |||||||| | ||||||||||| |||| ||| || Sbjct 90307885 GCCAGTTCTCCGGGCAGTAGAAGGCGCACCGACGTCTGGATCTCCCGCGATGTGATTGTA 90307826 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 |||||||| | |||||||| || ||||| | | || || || | ||||| Sbjct 90307825 GACCGCTTGTTGTAATGCGCCAGGCGAGAAGCCTCATTTGCTATACGCTCAAAGATGTCA 90307766 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 ||||||||||||||||||| ||| | |||| |||||||| ||| ||||||||| Sbjct 90307765 TTGACAAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCCGGGTGCACC 90307706 Query 1254528 TGCTTGAGCACCTTGTA 1254544 ||||| ||||| ||||| Sbjct 90307705 TGCTTCAGCACTTTGTA 90307689 Score = 107 bits (118), Expect = 2e-17 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 |||||| || || ||| | ||| |||||||| ||||||||||| || | ||| | Sbjct 90355639 TGGCCAACTCTCCCGGCAGCAGCAGACGCACGGCCGTCTGGATCTCCCGGGAAGTGATGG 90355580 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 | ||||||||| | |||||||||||| ||||| | ||||| |||| || | Sbjct 90355579 TCGAGCGCTTGTTGTAATGCGCCAGACGGGAAGCCTCACCTGCTATGCGCTCGAAGATAT 90355520 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 | || || || || ||||||| ||| | ||| ||||||||| ||| ||||||| Sbjct 90355519 CATTCACGAAGGAATTCATGATTCCCATAGCCTTAGATGAGATGCCCGTGTCCGGGTGCA 90355460 Query 1254526 CCTGCTTGAGCACCTTGTA 1254544 | ||||| ||||||||||| Sbjct 90355459 CTTGCTTCAGCACCTTGTA 90355441 >seq2669 Length=49141 Score = 111 bits (122), Expect = 2e-18 Identities = 202/296 (68%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| ||||| || ||||| || |||||||| || || | |||||| ||||| Sbjct 22733 GAGTGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACTTGA 22792 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || | | || || | ||| |||||| || ||||| || || || || || Sbjct 22793 ACTTCTTGGCTAAATCGCTCCACCAAGTTCTCATTGACTATGCCATCACTCGCTGCAAAG 22852 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 |||||||| || || ||||| || | ||| ||| | || | | ||||||| Sbjct 22853 AAAGCCAGAACATGAGATATAAAATGTCTCTCATCGGGTTTCAGAGCCTCCCAGTGCTGA 22912 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 | || | ||||||||||||||||| ||||| | ||||||||||| || |||||| Sbjct 22913 ATATCCTTGGAAAGGTCCACCTCCTCGGCAGTCCAAAAGGAGGCCTCGGCTTTCTTGTAC 22972 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTC 869928 |||| ||| | | ||||| ||| || |||| | |||||| |||||| || Sbjct 22973 ATCTGCCAGATATCATGGTACTCGATGGGAAAGACAGCGAAGCGGCGGGGGTTTTC 23028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106879711472354