Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq22 129 4e-25 seq25 127 1e-24 seq4 127 1e-24 seq14 122 6e-23 seq19 113 3e-20 seq8 100 2e-16 seq16 82.4 5e-11 >seq22 Length=147524369 Score = 129 bits (142), Expect = 4e-25 Identities = 159/216 (74%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | |||| ||| ||||| ||||| ||||| || ||| |||| |||| Sbjct 136851168 CAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 136851109 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| || || || ||||| ||||| | ||||||| | || | || |||||||| Sbjct 136851108 CTCCAGCTGTTTGCCCGCGAATATCAGCCTCTGCTGGTTAGGTGGGATGCCTTCCTTGTC 136851049 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || ||||| || || || | ||| ||| |||||| |||| || ||| Sbjct 136851048 TTGGATCTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATG 136850991 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| ||| | |||||||| || |||||||||||| Sbjct 136850990 GTCTTGCCCNTCAGGGTCTTCACGAAGATCTGCATG 136850955 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 |||| ||||| |||| |||| |||||| |||| ||| ||||| || | | || || Sbjct 124974681 CTCAACACCAGATGAAGGGTGGACTCCTTTTGAANGTTGTAGTCAGACAAAGTCCGGCCA 124974622 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || ||||| ||||| || || |||||||||| ||||| || | || | || ||||| Sbjct 124974621 TCTTCCAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTA 124974562 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || || || | |||| | || || || || || | || ||| Sbjct 124974561 TCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATG 124974502 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||| |||||||| |||||||||||||| Sbjct 124974501 GTTTTCCCCGTAAGGGTCTTCACAAAGATCTGCAT 124974467 >seq25 Length=158037523 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | ||||||||||| | ||| ||| ||||| ||||| || || || Sbjct 45424427 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAG 45424486 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| || || ||||| ||||| |||||||| | |||||||| | || Sbjct 45424487 AGAGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 45424546 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||| || || | || || || ||| || || | ||| ||| ||| || Sbjct 45424547 ATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTCGCGATGGTGTCACTGGGCTCCACC 45424606 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | ||| |||||||| || || |||||||| ||||||||||||||| Sbjct 45424607 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATG 45424654 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | ||| ||| ||||| |||| || || || ||| |||| |||| Sbjct 146223655 AGGACCAGGTGCAGGGTCGACTCTTTCTGGTTGTTGTAATCAGAGAGGGTGCGGCCATCT 146223714 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||||||||| || || ||||| || | |||||||| | | | |||| || || Sbjct 146223715 TCCAGTTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTC--GGGAGATGGCCTCTTTATCC 146223772 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | |||| ||| ||| | || | ||| |||||| Sbjct 146223773 TGGATCTTGGCCTTCACGTTCTCGATGGTTTCACTGGGCTCCATCTCTAGGGTGATGGTC 146223832 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || |||||||| | ||||||||||| Sbjct 146223833 TTGCCAGTTAGGGTCTTCATGAAGATCTGCAT 146223864 Score = 89.7 bits (98), Expect = 3e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | ||||||||||| | ||| ||||||||| ||||| || || || Sbjct 45424655 CCACCCCTCAGGCGGAGGACCAGGTGCAGGGTTGACTCCTTCTGGATGTTGTAATCAGAG 45424714 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| ||||| ||||| || || |||||||| | |||||||| | || Sbjct 45424715 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 45424774 Query 34871 ACCCCCTCCTTGTC 34884 | ||||| || || Sbjct 45424775 ATGCCCTCTTTATC 45424788 >seq4 Length=117747451 Score = 127 bits (140), Expect = 1e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | ||| ||||||||| ||||| || || || ||| |||| |||| Sbjct 57378934 AGGACCAGGTGCAGGGTTGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCT 57378875 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| ||||| |||||||| | || ||||| | || | ||||| || || Sbjct 57378874 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGNTGGTCAGGGGGGATGCCCTCTTTATCC 57378815 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | | || | ||| ||| ||| || || | ||| |||||| Sbjct 57378814 TGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTC 57378755 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || |||||||| || ||||||||||| Sbjct 57378754 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 57378723 Score = 125 bits (138), Expect = 5e-24 Identities = 155/210 (74%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 34771 CAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAG 34830 |||||| | |||| ||| ||||| ||||| ||||| || ||| |||| |||| ||||| Sbjct 57051179 CAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAG 57051238 Query 34831 TTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTAT 34890 || || || || || ||||| | |||||||| | || | || |||||||| | || Sbjct 57051239 CTGTTTGCCCGCTAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGGAT 57051298 Query 34891 TTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 || ||||| || || || | ||| ||| |||||| |||| || |||||||| Sbjct 57051299 CTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTG 57051356 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| | ||||||||||| |||||||||||| Sbjct 57051357 CCCATCAGGGTCTTTACGAAGATCTGCATG 57051386 Score = 123 bits (136), Expect = 2e-23 Identities = 158/216 (73%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | |||| ||| ||||| ||||| || || || ||| || | |||| Sbjct 92566653 CAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCAGACAGGGTGTGGCCATC 92566712 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || || || |||||||| ||||| | |||||||| | || | || |||||||| Sbjct 92566713 CTCTAGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCAGGTGGGAGGCCTTCCTTGTC 92566772 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || ||||| || || || | ||| ||| ||| || |||| || ||| Sbjct 92566773 TTGGATCTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCTACCTCAAGAGTGATG 92566830 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| ||||| |||||||| || |||||||||||| Sbjct 92566831 GTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 92566866 Score = 100 bits (110), Expect = 2e-16 Identities = 153/216 (71%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| ||||||| | |||| | ||||| ||||| ||||| || ||| |||| |||| Sbjct 55387576 CAGCACCAGGTACAAGGTGGAATGGTTCTGGATGTTGTAGTCTGAAAGGGTGCGTCCATC 55387635 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| || || || ||||| | ||| | |||||||| || | || || ||||| Sbjct 55387636 CTCCAGCTGTTTGCCTGCGAATACCAGCCTCTGCTGGTCAACTGGGATGCCTTCTTTGTC 55387695 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || ||||| || || || | ||| ||| ||| || |||| || ||| Sbjct 55387696 TTGGATCTTGACCTTGAC--ATTCTTGATGGTGTCACTGGGCTCCACCTCAAAAGTGATG 55387753 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| || || |||||||| || |||||||||||| Sbjct 55387754 GTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCATG 55387789 >seq14 Length=171410997 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | ||||||||||| | ||| ||| ||||| ||||| || || || Sbjct 144150348 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAG 144150407 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| || || ||||| ||||| |||||||| | |||||||| | || Sbjct 144150408 AGAGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 144150467 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||| || || | || || || ||| | | || | ||| ||| ||| || Sbjct 144150468 ATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCCACC 144150527 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| |||||||| || || |||||||| || ||||||||||| Sbjct 144150528 TCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 144150574 >seq19 Length=145277780 Score = 113 bits (124), Expect = 3e-20 Identities = 162/227 (71%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | ||||||||||| | ||| ||||||||| ||||| || || || Sbjct 136501827 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAG 136501886 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| ||||| ||||| || || |||||||| | |||||||| | || Sbjct 136501887 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTC-AGGGGG 136501945 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||| || || | || || || ||| | || | ||| ||| ||| || Sbjct 136501946 ATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 136502005 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| |||||||| | || |||||||| | ||||||||||| Sbjct 136502006 TCCAGGGTGATGGTCTTGCTGGTCAGGGTCTTCAGGAAGATCTGCAT 136502052 >seq8 Length=97450195 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 |||| ||||| |||| |||| |||||| |||||||| ||||| || | | || || Sbjct 30032860 CTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCCA 30032919 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || ||||| ||||| || || |||||||||| ||||| || | || | || ||||| Sbjct 30032920 TCTTCCAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTA 30032979 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || || || | |||| | || || || || || | || ||| Sbjct 30032980 TCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATG 30033039 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || |||||||| |||||||||||||| Sbjct 30033040 GTTTTCCCTGTAAGGGTCTTCACAAAGATCTGCAT 30033074 >seq16 Length=152576986 Score = 82.4 bits (90), Expect = 5e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | ||||||||||| | ||| ||| ||||| ||||| ||||| || Sbjct 6231846 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAC 6231787 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 ||| |||| |||| ||||| ||||| || || ||||| || | |||||||| Sbjct 6231786 AGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGGCTCTGCTGGTC 6231734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325680248817278