Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq8 100 2e-16 seq22 93.3 3e-14 seq14 91.5 1e-13 seq6 86.0 5e-12 >seq8 Length=97450195 Score = 100 bits (110), Expect = 2e-16 Identities = 165/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || | ||||| |||||||| || |||| || | Sbjct 30033074 ATGCAGATCTTTGTGAAGACCCTTACAGGGAAAACCATCACGCTCGAGGTTGAACCCTCG 30033015 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| | | | ||||| ||||| ||||| ||||| | || |||||| Sbjct 30033014 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 30032955 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||||| || | ||| ||||| |||||||| || | | || || | ||||||||| Sbjct 30032954 CAGAGACTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGGACTTTGTCTGACTACAAC 30032895 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAAA 107793 |||||||||||||| || | || ||||||||||| | || || || ||| |||| Sbjct 30032894 ATTCAAAAGGAGTCCACCCTTCATCTGGTGTTGAGACTTCGGGGTGGTGCTAAGAAAA 30032837 >seq22 Length=147524369 Score = 93.3 bits (102), Expect = 3e-14 Identities = 163/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || | || || |||||||| || |||| || | Sbjct 124974467 ATGCAGATCTTTGTGAAGACCCTTACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCG 124974526 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| | | | ||||| ||||| ||||| ||||| | || |||||| Sbjct 124974527 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 124974586 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||||| || | ||| ||||| |||||||| || | | || || | ||||||||| Sbjct 124974587 CAGAGACTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGGACTTTGTCTGACTACAAC 124974646 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAAA 107793 ||||||||||||| || | || ||||||||||| | || || || ||| |||| Sbjct 124974647 NTTCAAAAGGAGTCCACCCTTCATCTGGTGTTGAGACTTCGGGGTGGTGCTAAGAAAA 124974704 >seq14 Length=171410997 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| |||||||| || || | || || ||| |||| | ||||| || | Sbjct 64264054 ATGCAGATTTTTGTGAAGACCCTTACGGGGAAACCCATCTCGCTCGAAGTTGAACCCTCA 64263995 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGG-CGTGCCCGTGGATCA 107674 || ||| | | | ||||| ||||| ||||| ||||| | ||| | || |||| Sbjct 64263994 GACACTATAGAAAATGTAAAGGCCAAGATCTAGGATAAGGAAGGACTTGCTCTTG-ATCA 64263936 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| ||||| |||||||| || | | || || | |||||||| Sbjct 64263935 GCAGAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCTGGACTTTGTCTGACTACAA 64263876 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGA 107771 ||||||||||||||| || | || ||||||||||| Sbjct 64263875 CATTCAAAAGGAGTCCACCCTTCATCTGGTGTTGAGA 64263839 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708 ||||| ||||| | || ||||||||||| || || | ||| ||||| |||||||| Sbjct 137735296 GATAAGGAAGGAATTCCTCCTGATCAGCAGAGGCTGATCTTTGCTGGTAAGCAGCTGGAA 137735237 Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || | || || | ||||||||||||||||||||||| || || || |||| ||| Sbjct 137735236 GATAGCCGGACTTTGTCTGACTACAACATTCAAAAGGAGTCCACCTTTCATCTGGTATTG 137735177 Query 107769 AGA 107771 ||| Sbjct 137735176 AGA 137735174 >seq6 Length=112758220 Score = 86.0 bits (94), Expect = 5e-12 Identities = 108/146 (74%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 107649 GATAAAGAAGG-CGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGA 107707 ||||| ||||| | ||| | || |||||||||| || | ||| ||||| |||||||| Sbjct 8842593 GATAAGGAAGGACTTGCTCCTG-ATCAGCAGAGGCTGGCCTTTGCTGGTAAGCAGCTGGA 8842535 Query 107708 GGACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTT 107767 || | | || || | ||||||||||||||||||||||| || | || ||||||| Sbjct 8842534 AGATGGCCGGACTTTGTCTGACTACAACATTCAAAAGGAGTCCACCCTTCATCTGGTGTT 8842475 Query 107768 GAGATTGCGAGGGGGAAATAATAAAA 107793 |||| | || || || ||| |||| Sbjct 8842474 GAGACTTCGGGGTGGTGCTAAGAAAA 8842449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398861428534618