Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq8 123 2e-23 seq14 113 3e-20 seq4 113 3e-20 seq22 105 5e-18 seq19 87.8 1e-12 >seq8 Length=97450195 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||||| |||||| ||||| || ||||||||||| || || | | || || ||| Sbjct 30032862 CAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATC 30032921 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || || || || |||||| | |||| ||| |||||||| || ||||| || || || || Sbjct 30032922 TTCCAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 30032981 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| |||||| || |||| || || || || || || Sbjct 30032982 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 30033041 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || || | ||| || ||||| |||||||| Sbjct 30033042 TTTCCCTGTAAGGGTCTTCACAAAGATCTGCAT 30033074 Score = 98.7 bits (108), Expect = 8e-16 Identities = 152/217 (70%), Gaps = 10/217 (5%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||||| |||||| ||||| || ||||||||||| || || | | || || ||| Sbjct 95921283 CAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATC 95921224 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCT---CTTT 29690 || || || || |||| | | |||| || |||||||| || ||||| || | || Sbjct 95921223 TTCCAGCTGCTTACCAGTAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTATCCTGG 95921164 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| ||| ||| |||||| |||||| || |||| || || | || || Sbjct 95921163 GTCTTGGCCTTT-------ACATTTTCTATAGTGTCCGAGGGTTCAACCTCGGGCGTGAT 95921111 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||| || || | ||| || ||||| ||||||||| Sbjct 95921110 GGTTTTCCCCGTAAGGGTCTTCACAAAGATCTGCATT 95921074 >seq14 Length=171410997 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 |||| ||||| ||||| || ||||||||||| || || | | || || ||| || Sbjct 137735181 ACCAGATGAAAGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCTATCTTCC 137735240 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 || || || |||||| | |||| || |||||||| || ||||| || || || || || Sbjct 137735241 AGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 137735300 Query 29698 AATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTG 29757 || || ||| |||||| |||||| || |||| || ||||| || || ||||| Sbjct 137735301 GTCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACCTCAAGCGTGATGGTTTTC 137735360 Query 29758 CCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || | ||| || ||||| ||||||||| Sbjct 137735361 CCCGTAAGGGTCTTCACAAAAATCTGCATT 137735390 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||||| ||| || |||| || || || || ||||| || ||||| ||||| | Sbjct 144150348 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAG 144150407 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || || || ||||| ||| | |||| || ||||| || || || Sbjct 144150408 AGAGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 144150467 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || |||||||| || || | || || || |||| | |||||| | || || Sbjct 144150468 ATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCCACC 144150527 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || || ||||| || | ||| || || || ||||||||||| Sbjct 144150528 TCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 144150577 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||||| |||||| ||||| || ||||||||||| || || | | || | ||| Sbjct 64263842 CAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCAGCCATC 64263901 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || || || || |||||| | |||| || |||||||| | | || || || || || Sbjct 64263902 TTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAAGAGCAAGTCCTTCCTTATC 64263961 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 | | || || ||| |||||| |||||| || |||| ||||| || | || | Sbjct 64263962 CTAGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACTTCGAGCGAGATGGG 64264021 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || || | ||| || ||||| |||||||| Sbjct 64264022 TTTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 64264054 >seq4 Length=117747451 Score = 113 bits (124), Expect = 3e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||||||||||| || | ||||| ||||| || ||||| ||||| | Sbjct 92566639 CCACCGCGCAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCAGAC 92566698 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||| | ||| || || |||||||| || |||||| || ||||| || || || Sbjct 92566699 AGGGTGTGGCCATCCTCTAGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCAGGTGGG 92566758 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 | || || |||||||| | || |||||| | || | |||||| | ||||| Sbjct 92566759 AGGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCTACC 92566818 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 |||||||| || || ||||| || | ||| || || || |||||||| || Sbjct 92566819 TCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGTT 92566868 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||||||||||| | | ||||| | || || ||||| || || | | Sbjct 55387562 CCGCCACGCAGACGCAGCACCAGGTACAAGGTGGAATGGTTCTGGATGTTGTAGTCTGAA 55387621 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || |||||||| || ||| || || ||||| || || Sbjct 55387622 AGGGTGCGTCCATCCTCCAGCTGTTTGCCTGCGAATACCAGCCTCTGCTGGTCAACTGGG 55387681 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || ||||||||||| | || |||||| | | | |||||| | || || Sbjct 55387682 ATGCCTTCTTTGTCTTGGATCTTGACCTTGACATTCTTGATGGTGTCACTGGGCTCCACC 55387741 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 |||| ||| || || ||||| || | ||| || || || |||||||| || Sbjct 55387742 TCAAAAGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCATGTT 55387791 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || |||| || || || || || || || ||||| ||||| | | |||||| | Sbjct 57378937 CGGAGGACCAGGTGCAGGGTTGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCA 57378878 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || ||||| ||| | |||| || || || || || || || |||||||| Sbjct 57378877 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGNTGGTCAGGGGGGATGCCCTCTTTA 57378818 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || || || |||| | |||||| | || || || || || || Sbjct 57378817 TCCTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATG 57378758 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || ||||| || | ||| || || || ||||||||||| Sbjct 57378757 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 57378720 >seq22 Length=147524369 Score = 105 bits (116), Expect = 5e-18 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||||||||||| || | ||||| ||||| || ||||| || || | Sbjct 136851182 CCACCGCGCAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 136851123 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || |||||||| || |||||| || ||||| | || || Sbjct 136851122 AGGGTGCGGCCATCCTCCAGCTGTTTGCCCGCGAATATCAGCCTCTGCTGGTTAGGTGGG 136851063 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || |||||||| | || |||||| | || | |||||| | || || Sbjct 136851062 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACC 136851003 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 |||||||| || || ||||| | | ||| || || || |||||||| || Sbjct 136851002 TCAAGAGTGATGGTCTTGCCCNTCAGGGTCTTCACGAAGATCTGCATGTT 136850953 >seq19 Length=145277780 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/230 (69%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||||| ||| || |||| || || || || || || || ||||| ||||| | Sbjct 136501827 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAG 136501886 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || ||||||||| | |||| || ||||| || || ||| Sbjct 136501887 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 136501946 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 | |||||||| || || | || || || | || | |||||| | || || Sbjct 136501947 -TGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 136502005 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || || |||| || | ||| || | || ||||||||||| Sbjct 136502006 TCCAGGGTGATGGTCTTGCTGGTCAGGGTCTTCAGGAAGATCTGCATTTT 136502055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385204354855842