Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq41 95.1 1e-14 seq3160 89.7 5e-13 seq5 89.7 5e-13 seq3059 84.2 2e-11 >seq41 Length=20663 Score = 95.1 bits (104), Expect = 1e-14 Identities = 200/293 (68%), Gaps = 4/293 (1%) Strand=Plus/Minus Query 21005 TTTATGTATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCAT 21064 || ||||||||||| |||||||| | ||||| ||||||||||| | | | | ||| Sbjct 18867 TTCATGTATTATGTGAATGATGGAGCATATGGACCATTTAACTGCATTCTTTATGATCAT 18808 Query 21065 GCTCGTCCTATGCCTATGCTGCTTAA-AGAAAAACGCCTTGAAGACAAAGACTATGTTTC 21123 || | | | | | |||||| || ||| | ||| || || || | || | | Sbjct 18807 GCCCATGTGAAGGCCCTGCTGCAGAAGAGACCCAAGCCA-GATGAGAAGTATTACTTATT 18749 Query 21124 TAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCC 21183 ||||| |||||||| | | |||||| | ||| | || ||| || | ||| | ||||| Sbjct 18748 CAGCATCTGGGGGCCAACATATGATGGCCTTGATCGGATCGTTGAGTGCTGTAACCTGCC 18689 Query 21184 AGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTCAG 21243 || | || ||||| || ||| | | |||||||||||||| || |||| | | | | | Sbjct 18688 TGAAATGCATGTGGGTGATTGGATGCTGTTTGAAAACATGGGTGCATACACCATTG-CTG 18630 Query 21244 CT-CTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGCACTATGTTATTTCA 21295 || |||| || || || || |||| | |||| | | ||||||| || ||| Sbjct 18629 CTGCTTCTACTTTCAATGGGTTCCAGAGGCCAAACATCTACTATGTAATGTCA 18577 >seq3160 Length=7177 Score = 89.7 bits (98), Expect = 5e-13 Identities = 125/174 (72%), Gaps = 1/174 (1%) Strand=Plus/Minus Query 20327 ACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTACTG 20386 |||||||||||| || || || ||||||||||| || ||| || || ||||| | Sbjct 2634 ACCCTAGCTGCCATTGGGACAGGATTTGACTGTGCAAGCAAGACTGAAATACAGTTGGTA 2575 Query 20387 CAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCCTTCG 20446 || || || || | | |||| ||||| | | ||||||||||||||| || | || Sbjct 2574 CAGGGGCTTGGGGTGCCCCCAGAGAGGATTATCTATGCGAATCCTTGTAAAAAGTC-TCT 2516 Query 20447 CATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAA 20500 || || | |||||| || | |||||| | ||||||||||||| |||||| Sbjct 2515 CAAATCAAGTATGCTGCCAGTAATGGAGTCCAGATGATGACTTTTGACAGTGAA 2462 >seq5 Length=114734182 Score = 89.7 bits (98), Expect = 5e-13 Identities = 194/285 (68%), Gaps = 4/285 (1%) Strand=Plus/Plus Query 21005 TTTATGTATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCAT 21064 || ||||||||| | |||||||| || ||||| ||||||||||| | | | | ||| Sbjct 29824447 TTCATGTATTATATGAATGATGGAGTATATGGATCATTTAACTGCATTCTCTATGATCAT 29824506 Query 21065 GCTCGTCCTATGCCTATGCTGCTTAA-AGAAAAACGCCTTGAAGACAAAGACTATGTTTC 21123 || | | | | | |||||| || ||| | ||| || || || | || || Sbjct 29824507 GCCCATGTGAAGGCCCTGCTGCAGAAGAGACCCAAGCC-AGATGAGAAGTATTACTCATC 29824565 Query 21124 TAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCC 21183 ||||| |||||||| | || |||||| | ||| | || || |||| ||| | ||||| Sbjct 29824566 CAGCATCTGGGGGCCAACATGTGATGGCCTTGATCGGATCGTGGAGCGCTGTAACCTGCC 29824625 Query 21184 AGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTCAG 21243 || | || ||||| || ||| | | ||||| |||||||| || |||| | | | | | Sbjct 29824626 TGAAATGCATGTGGGTGATTGGATGCTGTTTGAGAACATGGGTGCATACACCGTTG-CTG 29824684 Query 21244 CT-CTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGCACTATG 21287 || |||| || || || || |||| | |||| | | |||||| Sbjct 29824685 CTGCTTCTACTTTCAATGGGTTCCAGAGGCCAAACATCTACTATG 29824729 >seq3059 Length=53572 Score = 84.2 bits (92), Expect = 2e-11 Identities = 197/293 (67%), Gaps = 7/293 (2%) Strand=Plus/Plus Query 21005 TTTATGTATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCAT 21064 || |||||| |||| || ||||| || ||||| ||||||||||| | | | | ||| Sbjct 17953 TTCATGTATCATGTGAAGGATGGAGTATATGGATCATTTAACTGCATTCTTTATGATCAT 18012 Query 21065 GCTCGTCCTATGCCTATGCTGCTTAA-AGAAAAACGCCTTGAAGACAAAGACTATGTTTC 21123 || | | | | | |||||| || ||| | ||| || || || | || || Sbjct 18013 GCCCATGTGAAGGCCCTGCTGCAGAAGAGACCCAAGCC-AGATGAGAAGTATTACTCATC 18071 Query 21124 TAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCC 21183 ||||| ||||| || | || |||||| | ||||| || || |||| ||| | ||||| Sbjct 18072 CAGCATCTGGGGACCAACATGTGATGGCCTTGATTGGATCATTGAGCGCTGTAACCTGCC 18131 Query 21184 AGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTCAG 21243 || | || ||||| || ||| | | ||||| |||||||| || |||| | | | Sbjct 18132 TGAAATGCATGTGGGTGATTGGATGCTGTTTGAGAACATGGGTGCATACACC----ACTG 18187 Query 21244 CT-CTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGCACTATGTTATTTCA 21295 || |||| || || || || |||| | |||| | || ||| ||| || ||| Sbjct 18188 CTGCTTCTACTTTCAATGGGTTCCAGAGGCCAAACAACTACTCTGTAATGTCA 18240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463527278360160