Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq8 136 8e-27 seq22 129 1e-24 seq19 123 5e-23 seq14 118 2e-21 seq23 100 6e-16 seq9 96.9 7e-15 seq4 95.1 2e-14 seq18 91.5 3e-13 seq25 87.8 4e-12 seq6 87.8 4e-12 >seq8 Length=97450195 Score = 136 bits (150), Expect = 8e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || || || || || || || ||||| | | | | || ||||| || || Sbjct 30032872 TGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATCTTCCAGCTGC 30032931 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| ||||| || ||||| ||||| |||||||||||||| || ||||| Sbjct 30032932 TTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTG 30032991 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||||||||| || || || ||||| || || | || || || || ||||| Sbjct 30032992 GCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTCCCTGTA 30033051 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| ||||| |||||||| Sbjct 30033052 AGGGTCTTCACAAAGATCTGCAT 30033074 Score = 96.9 bits (106), Expect = 7e-15 Identities = 144/204 (71%), Gaps = 4/204 (2%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || || || || || || || ||||| | | | | || ||||| || || Sbjct 95921273 TGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATCTTCCAGCTGC 95921214 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||| |||||| || || || ||||| ||||| ||||||| ||| || |||| Sbjct 95921213 TTACCAGTAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTT----ATCCTGGGTCTTG 95921158 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||||||||| || || || ||||| || || || || || || || || Sbjct 95921157 GCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGGGCGTGATGGTTTTCCCCGTA 95921098 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | ||||| ||||| ||||||||| Sbjct 95921097 AGGGTCTTCACAAAGATCTGCATT 95921074 >seq22 Length=147524369 Score = 129 bits (142), Expect = 1e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || || || || | || || ||||| | | | | || ||||| || || Sbjct 124974669 TGAAGGGTGGACTCCTTTTGAANGTTGTAGTCAGACAAAGTCCGGCCATCTTCCAGCTGC 124974610 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| ||||| || ||||| ||||| |||||||||||||| || ||||| Sbjct 124974609 TTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTG 124974550 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||||||||| || || || ||||| || || | || || || || || || Sbjct 124974549 GCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTCCCCGTA 124974490 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| ||||| |||||||| Sbjct 124974489 AGGGTCTTCACAAAGATCTGCAT 124974467 >seq19 Length=145277780 Score = 123 bits (136), Expect = 5e-23 Identities = 165/228 (72%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| ||| || || | |||||| || || || ||||| || || |||||||| Sbjct 136501827 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAG 136501886 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || || ||||||||||| || || || || || || || Sbjct 136501887 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG-GGG 136501945 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || || ||||| || ||||| || || || || || || || ||| | || || || Sbjct 136501946 ATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 136502005 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| || || ||||||| |||| ||||| | || ||||||||| Sbjct 136502006 TCCAGGGTGATGGTCTTGCTGGTCAGGGTCTTCAGGAAGATCTGCATT 136502053 >seq14 Length=171410997 Score = 118 bits (130), Expect = 2e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 82614 GTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCA 82673 || || || || || || || || ||||| | | | | | ||||| || || || ||| Sbjct 137735193 GTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCTATCTTCCAGCTGCTTACCA 137735252 Query 82674 GCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTT 82733 |||||||| || || || ||||| ||||| |||||||||||||| || |||| || ||| Sbjct 137735253 GCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGGTCTTGGCCTTT 137735312 Query 82734 ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTC 82793 |||||||| || || || ||||| || || | || || || || || || | ||| Sbjct 137735313 ACATTTTCTATAGTGTCTGAGGGTTCAACCTCAAGCGTGATGGTTTTCCCCGTAAGGGTC 137735372 Query 82794 TTTACAAATATCTGCATT 82811 || ||||| ||||||||| Sbjct 137735373 TTCACAAAAATCTGCATT 137735390 Score = 105 bits (116), Expect = 1e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || || || || || || || ||||| | | | | || ||||| || || Sbjct 64263852 TGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCAGCCATCTTCCAGCTGC 64263911 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| || || || ||||| ||| | |||||||||||| | ||||| Sbjct 64263912 TTACCAGCAAAGATCAGCCTCTGCTGATCAAGAGCAAGTCCTTCCTTATCCTAGATCTTG 64263971 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||||||||| || || || ||||| ||||| | | || | || || || Sbjct 64263972 GCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACTTCGAGCGAGATGGGTTTCCCCGTA 64264031 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| ||||| |||||||| Sbjct 64264032 AGGGTCTTCACAAAAATCTGCAT 64264054 >seq23 Length=120012414 Score = 100 bits (110), Expect = 6e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 82665 TGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC 82724 || || ||||||||||| || | || ||||| ||||| |||||||||||||| || ||| Sbjct 46765005 TGCTTACCAGCAAAGATCAGGTTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATC 46765064 Query 82725 TTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCT 82784 || || ||||||||||| || || || | |||| || || | | || ||||| ||| Sbjct 46765065 TTGGCCTTTACATTTTCTATAGTGTCCAAAAGTTCAACCTCAAGCATGATGGTCTTCCCT 46765124 Query 82785 GTCAACGTCTTTACAAATATCTGCA 82809 | | ||||| ||||| |||||| Sbjct 46765125 ATAAGGGTCTTCACAAAAGTCTGCA 46765149 >seq9 Length=92629107 Score = 96.9 bits (106), Expect = 7e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| || || || |||||||||| || || || ||||| |||| | ||||||| Sbjct 13017492 CCATCTTCCAGCTGCTTACCAGCAAAGACCAGCCTCTGCTGATCAGGAGCAAGTCCTTCC 13017433 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 ||||| || ||||| || ||||||||||| || || | ||||| || || | || Sbjct 13017432 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTTTGAGGGTTCAACCTCAAGCGTG 13017373 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| || | ||||| ||||| |||||||| Sbjct 13017372 ATGGTCTTCCCCAAAAGGGTCTTCACAAAAATCTGCAT 13017335 Score = 95.1 bits (104), Expect = 2e-14 Identities = 144/204 (71%), Gaps = 1/204 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || || | || || || || ||||| | | | | || ||||| || || Sbjct 13458697 TGAAGGGTGGACTCCCTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATCTTCCAGCTGC 13458638 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||||||||| || || || ||||| |||| | |||| ||||| | || ||||| Sbjct 13458637 TTACCAGCAAAGACCAGCCTCTGGTGATCAGGAGCAAGTCCT-CCTTAACCTGGATCTTG 13458579 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||||||||| || || || |||| || || | || || ||||| || | Sbjct 13458578 GCCTTTACATTTTCTATGGTGTCCAGGGGTTTAACCTCGAGCGTGATGGTCTTCCCCATA 13458519 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | ||||| ||||| ||||||||| Sbjct 13458518 AGGGTCTTCACAAAAATCTGCATT 13458495 >seq4 Length=117747451 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || |||||| || | || || || || | ||||| || || || || || Sbjct 55387562 CCGCCACGCAGACGCAGCACCAGGTACAAGGTGGAATGGTTCTGGATGTTGTAGTCTGAA 55387621 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || || || ||||| || || || | || || || || || || Sbjct 55387622 AGGGTGCGTCCATCCTCCAGCTGTTTGCCTGCGAATACCAGCCTCTGCTGGTCAACTGGG 55387681 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || ||||| ||||| | || ||||| | || || ||| | || || || Sbjct 55387682 ATGCCTTCTTTGTCTTGGATCTTGACCTTGACATTCTTGATGGTGTCACTGGGCTCCACC 55387741 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| || ||||||||||||| ||||| || || |||||||| Sbjct 55387742 TCAAAAGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 55387788 >seq18 Length=146158383 Score = 91.5 bits (100), Expect = 3e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82611 AGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTT 82670 || || || || || || || || || ||||| | | | | | |||| || || || Sbjct 124961184 AGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCTATCTTTCAGCTGCTTA 124961243 Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||| ||||| || || || | | | ||||| |||||||||||||| || |||| || Sbjct 124961244 CCAGCGAAGATCAGCCTCTGCTTACCAGGAGGAATTCCTTCCTTATCCTGGGTCTTGGCC 124961303 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 |||||||| || || || || ||||| || |||| || || | ||| || | | Sbjct 124961304 TTTACATTATCTATAGTGTCCGAGGGTTCAACCTCCAGCGTGATGGCCTTCCCCATAAGG 124961363 Query 82791 GTCTTTACAAATATCTGCATTAT 82813 ||||| | ||| |||||||| || Sbjct 124961364 GTCTTCAGAAAAATCTGCATCAT 124961386 >seq25 Length=158037523 Score = 87.8 bits (96), Expect = 4e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| || || || | |||||| || || || ||||| || || |||||||| Sbjct 45424655 CCACCCCTCAGGCGGAGGACCAGGTGCAGGGTTGACTCCTTCTGGATGTTGTAATCAGAG 45424714 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || || ||||||||||| || || || || || || || Sbjct 45424715 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 45424774 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTC 82741 || || || ||||| || ||||| || || | || ||| Sbjct 45424775 ATGCCCTCTTTATCCTGGATCTTGGCCTTCAGATCTTC 45424812 >seq6 Length=112758220 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || || || || || || || ||||| | | | | || ||||| || || Sbjct 8842484 TGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATCTTCCAGCTGC 8842543 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||| || || || ||||| |||| | |||||||||||| || ||||| Sbjct 8842544 TTACCAGCAAAGGCCAGCCTCTGCTGATCAGGAGCAAGTCCTTCCTTATCCTGGATCTTG 8842603 Query 82728 GCTTTTACATTTTCAATCGTATC 82750 || ||||||||||| || || || Sbjct 8842604 GCCTTTACATTTTCTATAGTGTC 8842626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981787423111918