Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq4 147 2e-30 seq22 143 3e-29 seq14 127 2e-24 seq25 120 3e-22 seq19 109 5e-19 >seq4 Length=117747451 Score = 147 bits (162), Expect = 2e-30 Identities = 154/200 (77%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || ||||| ||| || ||| | | | ||||| ||||| |||| Sbjct 57051188 GGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCCTCCAGCTGTTTGC 57051246 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 |||| | || |||| ||||||||| || ||||||||||||||||| |||||| || Sbjct 57051247 CCGCTAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCCT 57051306 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||| | ||||| ||||||| || || | |||| ||| ||||| |||| | Sbjct 57051307 TGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCCATCAGGG 57051366 Query 133642 TTTTTACGAAAATCTGCATG 133661 | |||||||| ||||||||| Sbjct 57051367 TCTTTACGAAGATCTGCATG 57051386 Score = 141 bits (156), Expect = 9e-29 Identities = 153/200 (77%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || |||||||| || ||| | | | ||||| ||||| |||| Sbjct 92566668 GGTGGACTCTTTCTGGATGTTGTAATCAGACAGGGTGTGGCCA-TCCTCTAGCTGTTTGC 92566726 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || |||| ||||||||| || |||| |||||||||||| |||||| || Sbjct 92566727 CGGCGAATATCAGCCTCTGCTGGTCAGGTGGGAGGCCTTCCTTGTCTTGGATCTTGGCCT 92566786 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||| | ||||| ||||||| || || | |||| ||| ||||| ||||| | Sbjct 92566787 TGACATTCTCGATGGTGTCACTGGGCTCTACCTCAAGAGTGATGGTCTTGCCCGTCAGGG 92566846 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || ||||| ||||||||| Sbjct 92566847 TCTTCACGAAGATCTGCATG 92566866 Score = 114 bits (126), Expect = 1e-20 Identities = 146/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 57378920 GGTTGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCA-TCTTCCAGCTGCTTGC 57378862 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||| ||||| || |||||||| || || || |||||| || Sbjct 57378861 CGGCAAAGATCAGCCTCTGNTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCT 57378802 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | ||||| |||||||||| || | ||||| ||| ||||||||||| | Sbjct 57378801 TCACGTTTTCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTCAGGG 57378742 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 57378741 TCTTCACGAAGATCTGCAT 57378723 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| ||||| ||||| ||| | | |||| ||||||||| ||||||||||| ||| Sbjct 55387634 TCCTCCAGCTGTTTGCCTGCGAATACCAGCCTCTGCTGGTCAACTGGGATGCCTTCTTTG 55387693 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | || | ||||| |||||||||| || | |||| | Sbjct 55387694 TCTTGGATCTTGACCTTGACATTCTTGATGGTGTCACTGGGCTCCACCTCAAAAGTGATG 55387753 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 || ||||| ||||| || || ||||| ||||||||| Sbjct 55387754 GTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCATG 55387789 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || | | | ||| || ||| | ||||| ||||| ||||| Sbjct 55519195 GGTGGACTGGTTCTGGATGTAGCAGTCGGACAGGGTGCAGCCATCCTCCAGCTGTTTGCC 55519254 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | | |||| ||| ||||| | ||||||||||| |||| |||||| | ||| Sbjct 55519255 ATCGAACACCAGCCTCTGTTGGTCAAGTGGGATGCCTTCACTGTCTTGGATCTTGTCCTT 55519314 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | ||||| |||||| || || | |||| ||| ||| | ||||| || Sbjct 55519315 GACATTCTCGATGGTGTCACTGGGCTTGACCTCAAGAGTGATGGTCTTGTCCGTCAGGGT 55519374 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 55519375 CTTCACGAAGATCTGCATG 55519393 >seq22 Length=147524369 Score = 143 bits (158), Expect = 3e-29 Identities = 153/200 (77%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || ||||| ||| || ||| | | | ||||| ||||| |||| Sbjct 136851153 GGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCCTCCAGCTGTTTGC 136851095 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 ||||| | || |||| |||||||| || ||||||||||||||||| |||||| || Sbjct 136851094 CCGCGAATATCAGCCTCTGCTGGTTAGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCCT 136851035 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||| | ||||| ||||||| || || | |||| ||| ||||| |||| | Sbjct 136851034 TGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCCNTCAGGG 136850975 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || ||||| ||||||||| Sbjct 136850974 TCTTCACGAAGATCTGCATG 136850955 >seq14 Length=171410997 Score = 127 bits (140), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 144150377 GGTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCA-TCTTCTAGCTGCTTGC 144150435 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| || |||||||| || || || |||||| || Sbjct 144150436 CGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCT 144150495 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| ||||| |||||||||| || | ||||| ||| ||||||||||| | Sbjct 144150496 TCACGTTTTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTCAGGG 144150555 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 144150556 TCTTCACGAAGATCTGCAT 144150574 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| || || || ||||| || || || | | | || || |||| Sbjct 137735186 ATGAAAGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCTA-TCTTCCAGCT 137735244 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || || | || |||| |||||| || ||||| || |||||||| || | ||| Sbjct 137735245 GCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGGTCT 137735304 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | || | ||||| | ||| || || || | |||| |||||| || | Sbjct 137735305 TGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACCTCAAGCGTGATGGTTTTCCCCG 137735364 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || || || || ||||||||||| Sbjct 137735365 TAAGGGTCTTCACAAAAATCTGCAT 137735389 >seq25 Length=158037523 Score = 120 bits (132), Expect = 3e-22 Identities = 148/200 (74%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 45424456 GGTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCA-TCTTCTAGCTGCTTGC 45424514 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| || |||||||| || || || |||||| || Sbjct 45424515 CGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCT 45424574 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | | | | ||||| |||||||||| || | ||||| ||| ||||||||||| | Sbjct 45424575 TCACGTTCGCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGG 45424634 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || || || ||||||||| Sbjct 45424635 TCTTCACAAAGATCTGCATG 45424654 Score = 93.3 bits (102), Expect = 4e-14 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| | |||||||| | ||| | | | || || || ||||||| Sbjct 146223669 GGTCGACTCTTTCTGGTTGTTGTAATCAGAGAGGGTGCGGCCA-TCTTCCAGTTGCTTGC 146223727 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||||||| |||| | || || || |||||| || Sbjct 146223728 CTGCAAAGATGAGCCTCTGCTGGTCGGGA--GATGGCCTCTTTATCCTGGATCTTGGCCT 146223785 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | || || ||||||||| || | ||||| ||| ||||| || || | Sbjct 146223786 TCACGTTCTCGATGGTTTCACTGGGCTCCATCTCTAGGGTGATGGTCTTGCCAGTTAGGG 146223845 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || | ||| |||||||| Sbjct 146223846 TCTTCATGAAGATCTGCAT 146223864 >seq19 Length=145277780 Score = 109 bits (120), Expect = 5e-19 Identities = 146/199 (73%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 136501856 GGTCGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCA-TCTTCCAGCTGCTTGC 136501914 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| || |||||||| || || || |||||| || Sbjct 136501915 CAGCAAAGATCAGCCTCTGCTGGTCAGG-GGGATGCCCTCTTTATCCTGGATCTTGGCCT 136501973 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| |||||||||| || | ||||| ||| |||| |||||| | Sbjct 136501974 TCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCTGGTCAGGG 136502033 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || | ||| |||||||| Sbjct 136502034 TCTTCAGGAAGATCTGCAT 136502052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483401692792880