Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq13 232 8e-56 seq9 104 3e-17 >seq13 Length=57673148 Score = 232 bits (256), Expect = 8e-56 Identities = 550/827 (67%), Gaps = 8/827 (1%) Strand=Plus/Plus Query 162172 TCCCCCGATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGG 162231 || || | |||||| | |||||| || |||||||| || || |||||| ||||| || Sbjct 14687956 TCACCAGCTCCGAAGATGCACACAGAGCGCACGTGGACTCCAGCGCACGGTGGATAAGGG 14688015 Query 162232 GCCCCATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGC 162291 || || | | ||||| || ||| |||| |||||||| || ||||||| || || | | Sbjct 14688016 GCACCGTTGGAAACATCGCCTTCGAAGTACTGCCACTTGACAAACCTAGCAATGGCATTC 14688075 Query 162292 ATGTCGGAGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTC 162351 ||||| || ||| ||||||| ||| || | | ||||| || | || | || Sbjct 14688076 ATGTCTGACAAGTCATACTTGTGGCTTGAGGGGAACGAACCAGGGACTTCGGGGATCCTT 14688135 Query 162352 TGTAGAGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAAC 162411 || | || ||||| ||| || ||||| || || || |||| | ||| ||||| ||| Sbjct 14688136 TGGATGGTGGCCCAGAGGAACTCATCTGGGCTGTATGTGTCCTGTGCCCATTCCATCAAC 14688195 Query 162412 TCCCTGACCGTTTT-ATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTA 162470 | ||| |||| || | || | ||| || || ||| | || | ||||| Sbjct 14688196 TTT-TGAATATTTTCATTTTCCAGCACGTAGCCTACATATTCCCTACTGACCACGAAGTA 14688254 Query 162471 CGCGCTACCAGAAAACACGGG---TATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGT 162527 || || || ||||| | || | || || || || || ||||| || || || Sbjct 14688255 GGCACTGCCTGAAAAGAGAGGAGTTTTGAGT---GGGGGTGGTGCTTTGCCTATTCCAGT 14688311 Query 162528 GTTGACTACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGT 162587 |||||| | | | || || || || || ||| || |||| || | ||| ||| Sbjct 14688312 GTTGACCAGCTTCCCATCGACAACGGTGTATCTTTTTTTCCATCTCTCTTCCTTGTTGGG 14688371 Query 162588 AGACGGGTGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCAT 162647 || | | || || || || ||||| || || ||| |||| | || || Sbjct 14688372 AGGCATCTTCTCAGTTTCCAGGCTGTTTTCCCCTGTGGAGCACTTGAGCTTCCTGACAAT 14688431 Query 162648 CTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTT 162707 || || ||||| |||| ||| || || | || |||||||| || | || ||||| || Sbjct 14688432 TTCCAGGTTGGTTTTAATGGGGAAATCCATACCACAGAGATTGATCAAGTACTTCCAGTT 14688491 Query 162708 AACGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGA 162767 | | | || |||||| |||| | ||||| || || |||| || |||||||| || Sbjct 14688492 TGCATTCATTCTGTACAGGTCCTTCATGCAGTTGAGGTCAGCCTTAACCCGACTCCAGGA 14688551 Query 162768 CGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTAT 162827 ||| || || || ||||||||| |||| ||||||||||| || || || || | || Sbjct 14688552 CGCATAAACAACACTCTCCAACTGGCTGGCCACAAAGACATTATCAAAGCAGGATGCGAT 14688611 Query 162828 CCCCATCACGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAG 162887 ||| ||| || | | || | || ||||| || || ||||| | |||||| | Sbjct 14688612 GCCCTGCACCGCGTCTAAAAAGAATTCCTCTGCTTTTCTGTCCACGTGAATGCAGTAGAA 14688671 Query 162888 ATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTAC 162947 ||||||||| |||||||||||||| | || || | ||| || |||||||| || || Sbjct 14688672 ATTCTGAGGCATATAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATCTTATGATGAAC 14688731 Query 162948 CACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994 |||||| ||||| || || || || | |||| || ||| |||| Sbjct 14688732 CACGATGGAATATGCAATTGGAAAGCCTACCTCTTCTTTACTAAGAG 14688778 >seq9 Length=92629107 Score = 104 bits (114), Expect = 3e-17 Identities = 147/204 (72%), Gaps = 7/204 (3%) Strand=Plus/Plus Query 171524 ACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTTTCCCACTTGACTTTTAGGA 171583 ||| |||||| || ||| || | ||| ||||| |||| | || |||||| |||| || Sbjct 42594758 ACACTCCCCAGGTATAAAACCTGGCAGATCACTTCCT---TCCCAACTTGAGTTTTGGGG 42594814 Query 171584 TCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTTACGATGTAGAACGG--TTT 171641 ||||| || | || ||||| || |||||||||||||| || ||| ||| | | | Sbjct 42594815 TCTTTGACCCGGAGGATGCTGGTGACAGATGTAGTCCCATTTGAATG--GAAGTGACTCT 42594872 Query 171642 TAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAATATAACAGGAGCTGGTCTAG 171701 |||||||| || ||||| | || | | ||||| | || |||| ||||| | | Sbjct 42594873 CGGTACTATTCTCAATTCCTGTCCCAGTGCCCTTCCAGGAGATGGCAGGGGCTGGACGGG 42594932 Query 171702 CAGTAGCAGAGCAAGTTATGTTTA 171725 |||| ||||||||||| ||||||| Sbjct 42594933 CAGTCGCAGAGCAAGTGATGTTTA 42594956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578409137475200