Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq8 127 5e-24 seq22 123 6e-23 seq14 93.3 1e-13 seq18 89.7 1e-12 seq25 87.8 4e-12 seq6 87.8 4e-12 >seq8 Length=97450195 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || ||||| ||||| ||||| | || || ||| || ||| Sbjct 30033071 CAGATCTTTGTGAAGACCCTTACAGGGAAAACCATCACGCTCGAGGTTGAACCCTCGGAC 30033012 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| |||||| ||||| || || || ||||||||| || || || Sbjct 30033011 ACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAG 30032952 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||| ||||| || || |||||| |||||||||| |||||||| | || |||||| | Sbjct 30032951 AGACTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGGACTTTGTCTGACTACAACATT 30032892 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||| || ||||| || || ||||||||||| Sbjct 30032891 CAAAAGGAGTCCACCCTTCATCTGGTGTTGAGACTTCG 30032854 Score = 91.5 bits (100), Expect = 3e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| || || ||||| || ||||| || || | || ||||||| ||||||| Sbjct 30032854 CGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTC 30032913 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAG 204846 | ||||||||||||||||| || || ||||| || Sbjct 30032914 CGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAG 30032948 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 204753 GAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCC 204812 |||||||||| || || ||||| || ||||| || || | || ||||||| |||||||| Sbjct 95921290 GAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCC 95921231 Query 204813 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||||||||||||||||| || | ||||| |||| || ||| Sbjct 95921230 GGCCATCTTCCAGCTGCTTACCAGTAAAGATCAGCCTCTGCTGA 95921187 >seq22 Length=147524369 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || || ||||| ||||| | || || ||| || ||| Sbjct 124974470 CAGATCTTTGTGAAGACCCTTACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCGGAC 124974529 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| |||||| ||||| || || || ||||||||| || || || Sbjct 124974530 ACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAG 124974589 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||| ||||| || || |||||| |||||||||| |||||||| | || |||||| | Sbjct 124974590 AGACTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGGACTTTGTCTGACTACAACNTT 124974649 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||| || ||||| || || ||||||||||| Sbjct 124974650 CAAAAGGAGTCCACCCTTCATCTGGTGTTGAGACTTCG 124974687 Score = 91.5 bits (100), Expect = 3e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| || || ||||| || ||||| || || | || ||||||| ||||||| Sbjct 124974687 CGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAANGTTGTAGTCAGACAAAGTC 124974628 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAG 204846 | ||||||||||||||||| || || ||||| || Sbjct 124974627 CGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAG 124974593 >seq14 Length=171410997 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 204753 GAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCC 204812 |||||||||| || || ||||| || ||||| || || | || ||||||| |||||||| Sbjct 64263835 GAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCC 64263894 Query 204813 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||||||||||||||||| || || ||||| |||| || ||| Sbjct 64263895 AGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGA 64263938 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 204753 GAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCC 204812 |||||||||| || || |||| || ||||| || || | || ||||||| |||||||| Sbjct 137735170 GAAGTCTCAATACCAGATGAAAGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCC 137735229 Query 204813 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||||||||||||| || || ||||| |||| || ||| Sbjct 137735230 GGCTATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGA 137735273 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| | || ||||| |||||| | ||| Sbjct 144150559 AAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAGCCCAGTGACACCATTGAAAAC 144150500 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || ||||| || || || ||| || || || ||||| Sbjct 144150499 GTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGACCAGCAGAGGCTGATCTTT 144150440 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | |||||||| | ||| | | ||||||||| ||||||||||||| Sbjct 144150439 GCCGGCAAGCAGCTAGAAGATGGCCGCACTCTCTCTGATTACAACATCCAGAAAGAGTCG 144150380 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 144150379 ACCCTGCACCTGGT 144150366 >seq18 Length=146158383 Score = 89.7 bits (98), Expect = 1e-12 Identities = 152/220 (69%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || | || || | ||||| |||| || ||| || ||| Sbjct 124961380 CAGATTTTTCTGAAGACCCTTATGGGGAAGGCCATCACGCTGGAGGTTGAACCCTCGGAC 124961321 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || |||||| |||| || || || ||||||||| || | || Sbjct 124961320 ACTATAGATAATGTAAAGGCCAAGACCCAGGATAAGGAAGGAATTCCTCCTGGTAAGCAG 124961261 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || |||||||| || |||||| || ||||| | | |||||| | || |||||| | Sbjct 124961260 AGGCTGATCTTCGCTGGTAAGCAGCTGAAAGATAGCCGTACTTTGTCTGACTACAACATT 124961201 Query 206353 CAGAAAGAGTCTAC---TCTTCACCTTGTTTTGAGACTTC 206389 || || ||||| || |||||||||||| |||||||||| Sbjct 124961200 CAAAAGGAGTCCACCCTTCTTCACCTTGTGTTGAGACTTC 124961161 Score = 87.8 bits (96), Expect = 4e-12 Identities = 79/99 (80%), Gaps = 3/99 (3%) Strand=Plus/Plus Query 204753 GAAGTCTCAAAACAAGGTGAAGA---GTAGACTCTTTCTGGACATTATAGTCAGCCAAAG 204809 |||||||||| |||||||||||| || ||||| || || | || ||||||| ||||| Sbjct 124961161 GAAGTCTCAACACAAGGTGAAGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAG 124961220 Query 204810 TCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCC 204848 | | | ||||| ||||||||| || |||||||| |||| Sbjct 124961221 TACGGCTATCTTTCAGCTGCTTACCAGCGAAGATCAGCC 124961259 >seq25 Length=158037523 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || || || || ||||| |||| ||||| |||| Sbjct 45424650 CAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGAC 45424591 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || ||| || ||| ||||| || || ||||| || || || ||| || Sbjct 45424590 ACCATCGCGAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGACCAGCAG 45424531 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| ||||| |||||| | |||||||| | ||| | | ||||||||| || Sbjct 45424530 AGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACTCTCTCTGATTACAACATC 45424471 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||| || || ||||| || Sbjct 45424470 CAGAAAGAGTCGACCCTGCACCTGGT 45424445 >seq6 Length=112758220 Score = 87.8 bits (96), Expect = 4e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || |||||| || || || || || || ||| Sbjct 8842611 GTAAAGGCCAAGATCCAGGATAAGGAAGGACTTGCTCCTGATCAGCAGAGGCTGGCCTTT 8842552 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||||||||| |||||||| | || |||||| | || || ||||| Sbjct 8842551 GCTGGTAAGCAGCTGGAAGATGGCCGGACTTTGTCTGACTACAACATTCAAAAGGAGTCC 8842492 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| || || ||||||||||| Sbjct 8842491 ACCCTTCATCTGGTGTTGAGACTTCG 8842466 Score = 86.0 bits (94), Expect = 1e-11 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| || || ||||| || ||||| || || | || ||||||| ||||||| Sbjct 8842466 CGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTC 8842525 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAG 204841 | ||||||||||||||||| || || ||| Sbjct 8842526 CGGCCATCTTCCAGCTGCTTACCAGCAAAG 8842555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181772920746202