Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq8 96.9 3e-15 seq14 91.5 1e-13 seq22 89.7 5e-13 >seq8 Length=97450195 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970 ||| |||| ||| | | | ||||| ||||||||||||||||| || || || ||| Sbjct 30032862 CAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATC 30032921 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| ||||| ||||| | | |||| || | ||| ||||| ||||| || ||||| ||||| Sbjct 30032922 TTCCAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 30032981 Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090 || || || | | ||| | ||| || | || || || |||| ||| | || Sbjct 30032982 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 30033041 Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| || || || || || | || |||||||| Sbjct 30033042 TTTCCCTGTAAGGGTCTTCACAAAGATCTGCAT 30033074 >seq14 Length=171410997 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970 ||| |||| ||| | | | ||||| ||||||||||||||||| || || || ||| Sbjct 137735177 CAATACCAGATGAAAGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCTATC 137735236 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| ||||| ||||| | | |||| || | ||| ||||| ||||| || ||||| ||||| Sbjct 137735237 TTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 137735296 Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090 | || || | | ||| | ||| || | || || || || | ||| | || Sbjct 137735297 CTGGGTCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACCTCAAGCGTGATGGT 137735356 Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| || || || || || | ||||||||||| Sbjct 137735357 TTTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 137735389 >seq22 Length=147524369 Score = 89.7 bits (98), Expect = 5e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562 |||||| || ||||| | ||||||||||||||||| ||| ||||| || ||||| | Sbjct 105164791 TGTACTCTACTATTTCTGTACACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGGT 105164732 Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 147614 |||| ||||| || || | |||||| |||||||||| || |||||||| Sbjct 105164731 TGCTCTTCCGGTTACAGGAATCTTTGTAGAGCATGTATGGGGTACCGGTCTC 105164680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476592361942320