Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq9 174 2e-38 seq19 138 1e-27 seq1 132 6e-26 seq24 87.8 2e-12 >seq9 Length=92629107 Score = 174 bits (192), Expect = 2e-38 Identities = 230/319 (72%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||||||||||||||||| || | |||| |||| | || ||| | ||| || || Sbjct 42597442 GTGGTGACCCAGGATGAAAGAAAGGCGCTGCACACAACTGCATCCTTACGATGTTCTCTA 42597383 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 | || || ||||| ||||||| || |||||||||| || || | ||||| Sbjct 42597382 AAAACATCCCAGGAACCCTTGATTGTGACATGGCAGAAAAAGAAAGCCGTAAGCCCAGAA 42597323 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||| | || | |||||| ||| ||||| || ||||||| || || || |||| | Sbjct 42597322 AACATGGTCACCTACAGCAAAACCCATGGGGTTGTAATCCAGCCTGCCTACAAAGACAGG 42597263 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 |||||| |||| |||| |||||| ||||||| |||||| || ||||| || || || Sbjct 42597262 ATAAACGTCACGGAGCTGGGACTCTGGAACTCAAGCATCACCTTCTGGAACACAACATTG 42597203 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 || || ||||| ||||||| || ||||| ||||| ||||| ||| ||| |||| || Sbjct 42597202 GAAGATGAGGGTTGCTACATGTGTCTCTTCAACACGTTTGGTTCTCAGAAGGTCTCAGGA 42597143 Query 171372 GTGGCCTGCCTCACCCTCT 171390 || ||||| ||||||| Sbjct 42597142 ACAGCTTGCCTTACCCTCT 42597124 Score = 140 bits (154), Expect = 4e-28 Identities = 185/254 (73%), Gaps = 2/254 (1%) Strand=Plus/Minus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || ||||||| || || || || || | |||||| |||||||| |||||||| || Sbjct 42595002 GTACAGCCCATAGTACACCTTCACTACAACTATTTTGAAGACCACCTAAACATCACTTGC 42594943 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||| | |||||| || | ||| || | |||||| | ||| ||| |||||| Sbjct 42594942 TCTGCGACTGCCCGTCCAGCCCCTGCCATCTCCTGGAAGGGCACTGGGACAGGAATTGAG 42594883 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 || |||| |||| || | |||||| ||||| ||||| ||||| ||||| | |||| Sbjct 42594882 AATAGTACCGAGAGTCACTTCCATTCAAATGGGACTACATCTGTCACCAGCATCCTCCGG 42594823 Query 171573 GTTAAAGACCCCAAGAGTC-AGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGG 171631 || ||||||||||| | || ||||||| ||||| || |||||||| || | ||||||| Sbjct 42594822 GTCAAAGACCCCAAAACTCAAGTTGGG-AAGGAAGTGATCTGCCAGGTTTTATACCTGGG 42594764 Query 171632 AAATGTAACTAACT 171645 | ||| | | ||| Sbjct 42594763 GAGTGTGATTGACT 42594750 >seq19 Length=145277780 Score = 138 bits (152), Expect = 1e-27 Identities = 127/161 (79%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 146986 AGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGG 147045 ||||| || | || || | ||||||||||||||| | |||||||| ||||||||||| Sbjct 24628056 AGGCCTGTGATATGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAGGGC 24628115 Query 147046 ACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCC 147105 || ||||| ||||| || || ||||||||||| |||||||| || |||||||| | || Sbjct 24628116 ACACCCAGACCCATATCTCCTGACCTCTGGTAAAGCTGGCAAGATAGCTCCCCATTCACC 24628175 Query 147106 ACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 || || ||||| || ||| ||||| || ||||| ||||| Sbjct 24628176 ACATAGAACTGACAGAGGGCATGGCAAGGAGGCAGTGCCAT 24628216 >seq1 Length=185492789 Score = 132 bits (146), Expect = 6e-26 Identities = 128/167 (77%), Gaps = 12/167 (7%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 ||||||||||||||||||| ||||| ||||| ||||| ||||||||| ||| || |||| Sbjct 122592730 AGGGTTACTTGGGTTGCCAAGCCTTATCAGAAATGATCCAGTTTTACCTGGTAGAAGTGA 122592789 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| || ||||| || || ||||||||| | || | Sbjct 122592790 TGCCCCAGGCAGAGAAGCA------------TGGCCCAGAAATCAAGGAGCATTTGAATT 122592837 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | ||||| || ||||| |||||||| || || |||||||||| ||| Sbjct 122592838 CCCTGGGTGAGAAGCTGAAGACCCTCAGGATGCGGCTGCGGCGCTGT 122592884 >seq24 Length=120003353 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/234 (69%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 8665 CTCATAAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTT 8724 ||||||||||||| || ||| || ||||| || |||| |||||||||| |||| || Sbjct 119287483 CTCATAAAGTACAGGAAGCTACAAATTATGACTAATATCTACCTGTTCAACTTGGCAATT 119287542 Query 8725 GGTGACCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT-TCCACTCGGGGGGAAC 8783 ||||||||| | | ||||| |||| || |||||||||| | || | |||| Sbjct 119287543 TCTGACCTGCTCTTTCTCTTCACTGTCCCATTCTGGATTCACTATGTTCT---GTGGAA- 119287598 Query 8784 TGGTGGGTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGC 8843 || ||||| | |||| |||||||||| | | || ||| || |||| Sbjct 119287599 ---TGAGTGGGGTTTTGGCCACTACATGTGTAAAATGTTGTCTGGGTTTTATTACCTGGC 119287655 Query 8844 ACTGTACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGC 8897 ||||||| || || | || ||||||||| |||| | ||||| || || || Sbjct 119287656 TTTGTACAGTGAGATCTTTTTCATCATCCTGCTGACGATTGACAGATACCTGGC 119287709 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||||| ||||| || | |||| | || ||||||| | ||||| | || || ||||| Sbjct 119245963 GTACTGCCTGGTTTTCATCATTGGCGTGATAGGCAATGTCTTGGTGGTTCTGGTGCTCAT 119245904 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGC 8720 | | |||||||||| | | |||||||| ||||| ||||||||||||||| Sbjct 119245903 ACAACACAAGAGGCTTCGAAACATGACCAGCATCTACCTGTTCAACCTGGC 119245853 Score = 82.4 bits (90), Expect = 9e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||| ||||| ||||| | |||| | | ||||||| ||| ||||| || || ||||| Sbjct 119232103 GTATTCTCTCGTGTTCATCATTGGAGTGGTGGGCAATGTCCTAGTGATTCTGGTGCTCAT 119232044 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 || | | |||||| | |||||||| ||||| ||||||||||||||| | ||| Sbjct 119232043 GCAGCATAGGAGGCTTCAAAGCATGACCAGCATCTACCTGTTCAACCTGGCTGTCTCTGA 119231984 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 ||| | | ||||||| | || || |||||| ||| Sbjct 119231983 TCTGGTCTTCCTTTTCACTTTACCTTTCTGGATTGACT 119231946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583464937636800