Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq8 104 2e-17 seq14 93.3 4e-14 seq22 91.5 1e-13 seq4 89.7 5e-13 >seq8 Length=97450195 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 |||| |||||| || || || ||||| |||||||||||||||||||| | ||| || | Sbjct 30032857 AGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAA-AGTCCG 30032915 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || ||||| || || ||||| |||| | ||||||||| || || || ||||| Sbjct 30032916 GCCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTC 30032975 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || || || || | ||||| || | ||| || ||||| || Sbjct 30032976 CTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGT 30033035 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| || || | || || || || || ||||| Sbjct 30033036 GATGGTTTTCCCTGTAAGGGTCTTCACAAAGATCTGCAT 30033074 >seq14 Length=171410997 Score = 93.3 bits (102), Expect = 4e-14 Identities = 156/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 |||| ||| || || || | ||||| |||||||||||||||||||| | ||| || | Sbjct 137735172 AGTCTCAATACCAGATGAAAGGTGGACTCCTTTTGAATGTTGTAGTCAGACAA-AGTCCG 137735230 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || ||||| || || ||||| |||| | ||||||||| || || || ||||| Sbjct 137735231 GCTATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTC 137735290 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || | || || || || | ||||| || | ||| || || || || Sbjct 137735291 CTTATCCTGGGTCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACCTCAAGCGT 137735350 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 |||||||| || || | || || || ||||| |||||| || Sbjct 137735351 GATGGTTTTCCCCGTAAGGGTCTTCACAAAAATCTGCATTGTG 137735393 Score = 82.4 bits (90), Expect = 8e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 |||| |||||| || || || ||||| |||||||||||||||||||| | ||| | | Sbjct 64263837 AGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCAG 64263896 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 | || || ||||| || || ||||| |||| | ||||||||| | | | ||||| Sbjct 64263897 CCA-TCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAAGAGCAAGTCCTTC 64263955 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || | || || || || || | ||||| || | ||| || ||||| | Sbjct 64263956 CTTATCCTAGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACTTCGAGCGA 64264015 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||| ||| || || | || || || ||||| ||||| Sbjct 64264016 GATGGGTTTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 64264054 >seq22 Length=147524369 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| | ||||| || || || |||||||||||| | |||| | Sbjct 136851173 AGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGG 136851114 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||||||||| || || |||| | |||||| | || || |||||||| Sbjct 136851113 CCATCCTCCAGCTGTTTGCCCGCGAATATCAGCCTCTGCTGGTTAGGTGGGATGCCTTCC 136851054 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| || || ||||| || | ||||| | || || || ||||| Sbjct 136851053 TTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTG 136850994 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| || || | | || || ||||| || ||||| ||| Sbjct 136850993 ATGGTCTTGCCCNTCAGGGTCTTCACGAAGATCTGCATGTTG 136850952 >seq4 Length=117747451 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| | ||||| || || || |||||||| || | |||||| Sbjct 92566648 AGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCAGACAGGGTGTGG 92566707 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||||||||| || || |||| | |||||| || || || | |||||| Sbjct 92566708 CCATCCTCTAGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCAGGTGGGAGGCCTTCC 92566767 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| || || ||||| || | ||||| | || || || ||||| Sbjct 92566768 TTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCTACCTCAAGAGTG 92566827 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| || || || | || || ||||| || ||||| ||| Sbjct 92566828 ATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGTTG 92566869 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 134508 AGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGC 134567 ||||| | ||||| || || || |||||||||||| | |||| | || || ||| Sbjct 57051180 AGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGC 57051239 Query 134568 TGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATT 134627 |||||||| || || |||| | |||||| || || || |||||||| || ||||| || Sbjct 57051240 TGTTTGCCCGCTAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATC 57051299 Query 134628 TTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCG 134687 || ||||| || | ||||| | || || || ||||| ||||| || || Sbjct 57051300 TTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCC 57051359 Query 134688 GTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 | | || || ||||| || ||||| ||| Sbjct 57051360 ATCAGGGTCTTTACGAAGATCTGCATGTTG 57051389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505378424128240