Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2669 304 1e-77 seq5 105 5e-18 seq8 104 2e-17 seq19 102 6e-17 seq6 93.3 3e-14 >seq2669 Length=49141 Score = 304 bits (336), Expect = 1e-77 Identities = 613/897 (68%), Gaps = 32/897 (4%) Strand=Plus/Minus Query 43706 GTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTT 43765 || ||||| || | || ||||| || ||||| |||||||| ||||| |||| || ||| Sbjct 23007 GTCTTTCCCATCGAGTACCATGATATCTGGCAGATGTACAAGAAAGCCGAGGCCTCCTTT 22948 Query 43766 TGGACAGCAGAAGAAGTTGATTTGACTAAAGACTT--AGCACATTGGATTGCATTAAAAC 43823 ||||| || || || || || | | || || | ||||| ||| || | |||| Sbjct 22947 TGGACTGCCGAGGAGGTGGACCTTTCCAAGGATATTCAGCAC--TGGGAGGCTCTGAAAC 22890 Query 43824 CACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAG 43883 | | || | ||||||||||||| ||| |||| || ||||| ||||| || || |||| Sbjct 22889 CCGATGAGAGACATTTTATATCTCATGTTCTGGCTTTCTTTGCAGCGAGTGATGGCATAG 22830 Query 43884 TCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTT 43943 ||||||| || ||||| || ||| |||||||||||| | |||| || || |||| Sbjct 22829 TCAATGAGAACTTGGTGGAGCGATTTAGCCAAGAAGTTCAAGTTACAGAGGCCCGCTGTT 22770 Query 43944 TTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAG 44003 | ||||| || ||||||||||| ||||| || || || ||||||||||||| || || | Sbjct 22769 TCTATGGCTTCCAAATTGCCATGGAAAACATACACTCTGAAATGTACAGTCCCCTTATTG 22710 Query 44004 ATACGTACATCAAAGAT----GGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACA 44059 | || ||||| |||||| || | ||||| ||| | || ||||| || ||||| Sbjct 22709 ACACTTACATTAAAGATCCCAAGGAAAGAGAA-TATC---TCTTCAATGCTATTGAAACG 22654 Query 44060 GTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGA-TAAATTCAA--ATGAT 44116 | ||| | || | || || ||||||||| | |||| | ||| | | | Sbjct 22653 ATGCCTTGTGTGAAGAAGAAGGCTGACTGGGCCTTGCGCTGGACTGGGGACAAAGAGGCT 22594 Query 44117 TCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCG 44176 | | ||||||||| |||| || ||||| | ||| ||||| || |||||||| || || Sbjct 22593 ACGTATGGAGAACGCGTTGTGGCCTTTGCCGCTGTAGAAGGAATCTTCTTTTCCGGTTCT 22534 Query 44177 TTTGCGGCCATATTTTGGTTAAAGAAAC-GAGGTTTGATGCCTGGGTTGACGTTTTCAAA 44235 ||||| | ||||| ||| | ||||||| | || ||||||| || | || ||||| || Sbjct 22533 TTTGCATCGATATTCTGGCTCAAGAAACGGGGGGCTGATGCCGGGCCTTACATTTTCCAA 22474 Query 44236 TGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATA 44295 |||| | || ||| | || || || ||||| || || ||||| ||| || | | | Sbjct 22473 TGAGCTTATTAGTAGAGACGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTTCAAGCA 22414 Query 44296 TCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTAAA 44355 || | | || ||||| | ||| | | ||| || | | || | Sbjct 22413 CCTGGTACAC---AAGCCAGCGGAGCAGAGGGTCAGAGAGATAATCACCAA---CGTTAG 22360 Query 44356 GATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAA-TGAAC 44414 |||||| || || || | | || || || || || | || |||||||| || || Sbjct 22359 GATAGAGCAGGAGTTCCTCCCGGAGGCCTTGCCCGTGAAGCTCATCGGAATGAATTGCAC 22300 Query 44415 TTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCG 44474 ||||||||| || |||||||| | | || || | | | |||| ||||||| Sbjct 22299 -TTTGATGAAGCAGTATATTGAGTTTGTGGCCGACAGGCTTATGCTGGAGCTGGGTT--- 22244 Query 44475 ATAAACACTATATT----GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAA 44530 | |||| || || ||| |||| |||||||| | ||||||||||| || | ||| Sbjct 22243 -TTAACAAGATTTTCAGAGTAGAAAATCCGTTTGACTGCATGGAAAATATCTCACTAGAA 22185 Query 44531 GGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 || || |||||||| ||||| || || || || || |||||| | ||||| |||||| Sbjct 22184 GGAAAGACAAACTTCTTTGAGAAGCGAGTAGGCGAGTATCAGAGGATGGGAGTCATG 22128 >seq5 Length=114734182 Score = 105 bits (116), Expect = 5e-18 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||||||| | |||| || || ||||| ||||| || ||||||||||| ||||| Sbjct 21261478 CAAGAAGTTCAAGTTACAGAGGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAAC 21261537 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || || || |||||||||||||| || || || || ||||| |||||| Sbjct 21261538 ATACACTCTGAAATGTACAGTCTCCTTATTGACACTTACATTAAAGAT 21261585 Score = 89.7 bits (98), Expect = 4e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 44489 GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTT 44548 ||| |||| |||||||| || ||||||||||| || | ||||| || |||||||| ||| Sbjct 21263782 GTAGAAAATCCGTTTGACTTCATGGAAAATATCTCACTAGAAGGAAAGACAAACTTCTTT 21263841 Query 44549 GAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 || || || || || || |||||| | ||||| |||||| Sbjct 21263842 GAGAAGCGAGTAGGCGAGTATCAGAGGATGGGAGTCATG 21263880 >seq8 Length=97450195 Score = 104 bits (114), Expect = 2e-17 Identities = 105/136 (77%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 ||||| || | || || ||||| | ||||||||| |||||||| || ||||| ||||| Sbjct 32799424 GGAGA--GAGTGGTGGCCTTTGCTGCTGTGGAAGGAATTTTCTTCTCTGGATCATTTGCT 32799367 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 || ||||| ||| ||||||| |||| | |||||||| |||| ||||||||||| | Sbjct 32799366 GCAATATTCTGGCTAAAGAAGAGAGGCCTCATGCCTGGACTGACTTTTTCAAATGAACTG 32799307 Query 44243 ATAAGTCGTGATGAAG 44258 || || | ||||||| Sbjct 32799306 ATCAGCAGGGATGAAG 32799291 Score = 89.7 bits (98), Expect = 4e-13 Identities = 104/140 (74%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || |||||||||||||| || ||||| || ||||| |||||||| || ||||| | Sbjct 32788905 AAAATCCCTTTGATTTTATGGAGAACATTTCATTAGAAGGGAAAACAAATTTCTTTGAGA 32788846 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG---ATAACAAGTGACAATAAATTTA 44609 |||| ||| || ||||||||| | | |||||| ||| | || ||| || | Sbjct 32788845 AACGAGTTTCTGAGTATCAGCGATTTGCAGTCATGGCTGAAACCACAGATAATGTCTTCA 32788786 Query 44610 CTACGGATGAAGATTTCTAA 44629 | ||||| |||||||||| Sbjct 32788785 CCTTGGATGCAGATTTCTAA 32788766 Score = 82.4 bits (90), Expect = 6e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 43698 GGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGG 43757 |||||||| | |||||||| || |||| ||| || ||| |||||| || ||||||||| Sbjct 32812301 GGTTTGTCATCTTTCCAATCCAGTATCCTGATATCTGGAGAATGTATAAGCAAGCACAGG 32812242 Query 43758 CGTCATTTTGGACAGCAGAAGAAGT 43782 | || || |||||||||||||| || Sbjct 32812241 CATCCTTCTGGACAGCAGAAGAGGT 32812217 >seq19 Length=145277780 Score = 102 bits (112), Expect = 6e-17 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 |||||||| |||| ||||| ||| | |||||||| || || ||||| || || | Sbjct 24628218 TGATGGCACTGCCTCCTTGCCATGCCCTCTGTCAGTTCTATGTGGTGAATGGGGAGCTAT 24628159 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || || | || || || ||||| || ||||| || || || || || ||||| || | Sbjct 24628158 CTTGCCAGCTTTACCAGAGGTCAGGAGATATGGGTCTGGGTGTGCCCTTCAACATTGCCA 24628099 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACA 41197 | |||||||||||||| || ||||||||||| Sbjct 24628098 GCTATGCTCTGCTCACCTACATGATTGCACA 24628068 >seq6 Length=112758220 Score = 93.3 bits (102), Expect = 3e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 44489 GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTT 44548 ||| |||| |||||||| || ||||||||||| || | ||||| || |||||||| ||| Sbjct 9090445 GTAGAAAATCCGTTTGACTTCATGGAAAATATCTCACTAGAAGGAAAGACAAACTTCTTT 9090386 Query 44549 GAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 || || || || || || |||||| ||||||| |||||| Sbjct 9090385 GAGAAGCGAGTAGGCGAGTATCAGAGAATGGGAGTCATG 9090347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397440683287810