Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq22 105 6e-18 seq8 105 6e-18 seq14 93.3 4e-14 seq4 93.3 4e-14 seq25 84.2 2e-11 >seq22 Length=147524369 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27035 CAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTC 27094 ||| |||| ||| | || || || ||||||| |||||||| || | || | || Sbjct 124974679 CAACACCAGATGAAGGGTGGACTCCTTTTGAANGTTGTAGTCAGACAAAGTCCGGCCATC 124974620 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 ||| ||||| ||||| || | || || | ||| ||||| || || | || || ||||| Sbjct 124974619 TTCCAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 124974560 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214 ||||||| || | |||||| |||||| | || |||||| || || || || | Sbjct 124974559 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 124974500 Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| ||||| || || ||||||||||| ||||| Sbjct 124974499 TTTCCCCGTAAGGGTCTTCACAAAGATCTGCAT 124974467 >seq8 Length=97450195 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 27035 CAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTC 27094 ||| |||| ||| | || || || |||||||| |||||||| || | || | || Sbjct 30032862 CAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATC 30032921 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 ||| ||||| ||||| || | || || | ||| ||||| || || | || || ||||| Sbjct 30032922 TTCCAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 30032981 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214 ||||||| || | |||||| |||||| | || |||||| || || || || | Sbjct 30032982 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 30033041 Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || || || || ||||||||||| ||||| Sbjct 30033042 TTTCCCTGTAAGGGTCTTCACAAAGATCTGCAT 30033074 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 27035 CAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTC 27094 ||| |||| ||| | || || || |||||||| |||||||| || | || | || Sbjct 95921283 CAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATC 95921224 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 ||| ||||| ||||| | | || || | ||| ||||| || || | || ||||| Sbjct 95921223 TTCCAGCTGCTTACCAGTAAAGATCAGCCTCTGCTGATCAGGAGGAATTCC----TTATC 95921168 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214 | ||||| || | |||||| |||||| | || |||||| || | || || | Sbjct 95921167 CTGGGTCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGGGCGTGATGGT 95921108 Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| ||||| || || ||||||||||| ||||| Sbjct 95921107 TTTCCCCGTAAGGGTCTTCACAAAGATCTGCAT 95921075 >seq14 Length=171410997 Score = 93.3 bits (102), Expect = 4e-14 Identities = 164/238 (69%), Gaps = 1/238 (0%) Strand=Plus/Plus Query 27011 ATAATTATT-GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATAT 27069 ||||||| | ||| || | || || | |||| || | || || ||||| || || | Sbjct 144150337 ATAATTAATAGCCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGT 144150396 Query 27070 TGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTT 27129 |||| || | |||| | ||||| ||||| || ||||| | || || | ||| | Sbjct 144150397 TGTAATCAGAGAGAGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCT 144150456 Query 27130 GATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG 27189 | || || || | ||||||||||| ||||||| |||| | |||| | ||||| Sbjct 144150457 GGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTTTCAATGGTGTCAC 144150516 Query 27190 TGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || || ||||| || || | ||||| ||||| || ||||| ||||| ||||| Sbjct 144150517 TGGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 144150574 >seq4 Length=117747451 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| ||||||| |||| |||| || || || || ||||| || || ||||| || Sbjct 92566637 TGCCACCGCGCAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCAG 92566696 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | || | | || || |||||||| |||||| | || || | ||| || || || | Sbjct 92566697 ACAGGGTGTGGCCATCCTCTAGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCAGGTG 92566756 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || ||||||| || | | || | ||||| ||| || | Sbjct 92566757 GGAGGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCTA 92566816 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || ||||| || | ||||||||||| || ||||| ||||| ||||| Sbjct 92566817 CCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 92566865 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||| || | | |||| | ||||| ||||| || ||| Sbjct 57378919 GTTGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 57378860 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || || | ||| || || || || | ||||||||||| ||||||| ||| Sbjct 57378859 GCAAAGATCAGCCTCTGNTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTC 57378800 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | |||| | ||||| ||| || || ||||| || || | ||||| ||||| || Sbjct 57378799 ACGTTTTCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTCAGGGTC 57378740 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 57378739 TTCACGAAGATCTGCAT 57378723 >seq25 Length=158037523 Score = 84.2 bits (92), Expect = 2e-11 Identities = 162/238 (68%), Gaps = 1/238 (0%) Strand=Plus/Plus Query 27011 ATAATTATT-GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATAT 27069 ||||||| | ||| || | || || | |||| || | || || ||||| || || | Sbjct 45424416 ATAATTAATAGCCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGT 45424475 Query 27070 TGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTT 27129 |||| || | |||| | ||||| ||||| || ||||| | || || | ||| | Sbjct 45424476 TGTAATCAGAGAGAGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCT 45424535 Query 27130 GATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG 27189 | || || || | ||||||||||| ||||||| |||| | | | | ||||| Sbjct 45424536 GGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTCGCGATGGTGTCAC 45424595 Query 27190 TGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || || || || || || | ||||| ||||| || ||||||||||| ||||| Sbjct 45424596 TGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 45424653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424918024356144