Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq7 104 3e-17 seq5 91.5 2e-13 >seq7 Length=113551381 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || || | ||| || ||||| |||||||| ||||| ||||||||||| Sbjct 9390173 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 9390114 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| || | ||| | |||||| |||||| ||||||||||||||||||||| Sbjct 9390113 CCAATGGGCTGAAGCAAGTTAATGTTGTTACTGCCCACAAAATTCTGAGCCAAATTCACA 9390054 Query 152149 ATCGT 152153 || || Sbjct 9390053 ATAGT 9390049 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| |||||||||||| ||||||||| ||| || || || || || Sbjct 9390173 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 9390114 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | ||| | |||||| ||||||||| || |||||||| || ||| Sbjct 9390113 CCAATGGGCTGAAGCAAGTTAATGTTGTTACTGCCCACAAAATTCTGAGCCAAATTCACA 9390054 Query 117425 ATCGT 117429 || || Sbjct 9390053 ATAGT 9390049 >seq5 Length=114734182 Score = 91.5 bits (100), Expect = 2e-13 Identities = 169/246 (69%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 152056 TCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTG 152115 ||||||||||| ||||| ||||||||||| || ||||| | ||||| | || Sbjct 107221333 TCCTTGCCACCATGCAGCCTGGTTCCAAACTGACCGATGGGCTGTAAAAGGTTCAAATTA 107221392 Query 152116 TTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCG 152175 ||| |||||| ||||||||||||||||| | ||| || | ||| | ||||| Sbjct 107221393 TTGCTGCCCACAAAATTCTGAGCCAAATTGATAATGGTCATCATCAGTGACATCTCACCA 107221452 Query 152176 TGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCA--TGTCCG 152233 |||||||| | | | || || | | || || ||||| || ||||||| | || Sbjct 107221453 TGGTGATAAGAGGACATTTCGGCCACTGACCCAGCTAACTGGGCAACCTTCACTTCTCGC 107221512 Query 152234 TCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGT 152293 | |||| ||| |||| ||| | | | ||||| | ||| |||||||||||||| Sbjct 107221513 TTGTCA--TTCCGTTTGAAACAAGTAAACAAAACCTTTCTCTGACCTGGTTTCAAACCGT 107221570 Query 152294 CCACCA 152299 | |||| Sbjct 107221571 CTACCA 107221576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547194371287600