Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq13 132 6e-26 >seq13 Length=57673148 Score = 132 bits (146), Expect = 6e-26 Identities = 559/873 (64%), Gaps = 21/873 (2%) Strand=Plus/Minus Query 13683 GAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTC 13742 |||||||| | ||||| || || || || |||||| | || || ||||| || ||| | Sbjct 14688767 GAAGAGGTAGGCTTTCCAATTGCATATTCCATCGTGGTTCATCATAAGATTGAAATGCTT 14688708 Query 13743 GAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCC 13802 || | ||||||||||||||||| || ||||| |||||||| | ||||||||| Sbjct 14688707 GACAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTCTACTGCATTCACGTGGACAGA 14688648 Query 13803 AAGTCCGGCGACGAGTTCATCCGGGGCG---TCTCGGCCATCGCCAGGTGCTTCCCTAAC 13859 || | | | || ||| | | || | || |||||| ||||| ||| Sbjct 14688647 AAAGCAG---AGGAATTCTTTTTAGACGCGGTGCAGGGCATCGCATCCTGCTTTGATAAT 14688591 Query 13860 GTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCC 13919 || ||||| || | || | || || || | ||||||||||| || |||| Sbjct 14688590 GTCTTTGTGGCCAGCCAGTTGGAGAGTGTTGTTTATGCGTCCTGGAGTCGGGTTAAGGCT 14688531 Query 13920 GACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAAC 13979 ||||||| ||||||| ||||||| || | || |||| |||| || |||| Sbjct 14688530 GACCTCAACTGCATGAAGGACCTGTACAGAATGAATGCAAACTGGAAGTACTTGATCAAT 14688471 Query 13980 CTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAG-GC 14038 || || || ||||| ||||| | || ||||||||||| || || || ||| ||| || Sbjct 14688470 CTCTGTGGTATGGATTTCCCCATTAAAACCAACCTGGAAATTGTCAGGAAGCTCAAGTGC 14688411 Query 14039 CCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCAACCACAAGCTGCACCGCAT 14098 | || || ||| |||||| | ||| ||||| | ||||| | | || Sbjct 14688410 TCCACAGGGGAA-AACAGCCTGGAAACTGAGAAGATGCCTCCCAACAAGGAAGAGAG-AT 14688353 Query 14099 C---AGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGGTCAACACCGGCAGGAACAA 14155 | |||| ||| | || | | || || |||||||||| || | ||| Sbjct 14688352 GGAAAAAAAGATACACC-GTTGTCGATGGGAAGC----TGGTCAACACTGGAATAGGCAA 14688298 Query 14156 GGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTTGCGGTCACCCG 14215 || || || || |||| | || ||||| | || | || ||||| | ||||| | Sbjct 14688297 AGCACCACCCCCACTCAAAACTCCTCTCTTTTCAGGCAGTGCCTACTTCGTGGTCAGTAG 14688238 Query 14216 GGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGCTCATGCACTGGTTCGA 14275 ||| | || | || ||| || | | || | | | ||| | ||| | Sbjct 14688237 GGAATATGTAGGCTACGTGCTGGAAAATGAAAATATTCAAAAGTTGATGGAATGGGCACA 14688178 Query 14276 GGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTACGGGACGCC 14335 |||||| |||||||| || ||| ||| ||||||||| | || || || || || Sbjct 14688177 GGACACATACAGCCCAGATGAGTTCCTCTGGGCCACCATCCAAAGGATCCCCGAAGTCCC 14688118 Query 14336 CGGGGGGATCCCCGTTCACGTCA--AGTACGACACCTCGGACATGTGGGCCAAGGTCAGG 14393 || | ||||| ||| | || |||| ||| || |||||| |||| | ||| Sbjct 14688117 TGGTTCGTTCCCC--TCAAGCCACAAGTATGACTTGTCAGACATGAATGCCATTGCTAGG 14688060 Query 14394 TTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACCCGCCTTGC 14453 || ||||||||||| |||| ||| || ||| | || || |||| || || || ||| Sbjct 14688059 TTTGTCAAGTGGCAGTACTTCGAAGGCGATGTTTCCAACGGTGCCCCTTATCCACCGTGC 14688000 Query 14454 GACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGTGGCTGAAG 14513 | || ||||||| | | | | ||||||||||| | || ||| ||| ||| || | Sbjct 14687999 GCTGGAGTCCACGTGCGCTCTGTGTGCATCTTCGGAGCTGGTGACTTGAGCTGGATGCTG 14687940 Query 14514 AGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546 || | ||||| || ||||| ||||| ||| Sbjct 14687939 CGCCAACACCACCTTTTTGCCAATAAGTTTGAC 14687907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658713163333120