Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq4 138 1e-27 seq14 104 2e-17 seq25 102 7e-17 seq8 98.7 9e-16 seq19 96.9 3e-15 seq22 95.1 1e-14 >seq4 Length=117747451 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||| |||||| | || |||||||| || || || Sbjct 92566866 CATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTAGAGCCCAG 92566807 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| ||||| || || |||||||| |||||| | ||||| || || Sbjct 92566806 TGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCCTCCCACCTGACCA 92566747 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | |||| |||||||||||| | || || | ||| | || |||||||| Sbjct 92566746 GCAGAGGCTGATATTCGCCGGCAAACAGCTAGAGGATGGCCACACCCTGTCTGATTACAA 92566687 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || ||||| ||||| || |||| ||||| |||| |||||||| Sbjct 92566686 CATCCAGAAAGAGTCCACCTTGCACCTGGTGCTGCGTCTGCGCGGTGGCAT 92566636 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||| |||||| | || ||| |||| ||||| || Sbjct 55387789 CATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACTTTTGAGGTGGAGCCCAG 55387730 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || ||| ||||| || || ||||||||||||||||| ||| || || Sbjct 55387729 TGACACCATCAAGAATGTCAAGGTCAAGATCCAAGACAAAGAAGGCATCCCAGTTGACCA 55387670 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | ||| ||| |||||||| |||| || | ||| |||| || ||||| Sbjct 55387669 GCAGAGGCTGGTATTCGCAGGCAAACAGCTGGAGGATGGACGCACCCTTTCAGACTACAA 55387610 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || | || ||||| | |||| ||||| |||| || ||||| Sbjct 55387609 CATCCAGAACCATTCCACCTTGTACCTGGTGCTGCGTCTGCGTGGCGGCAT 55387559 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || || || || ||||| || Sbjct 57378723 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAGCCCAGT 57378782 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || || ||||| ||||| || || || || Sbjct 57378783 GACACCATCGAAAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGACCAN 57378842 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | |||||||| || ||||||| | ||| | || ||||||||| Sbjct 57378843 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGATTACAAC 57378902 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || || |||||||| ||| | || |||| Sbjct 57378903 ATCCAGAAGGAGTCAACCCTGCACCTGGT 57378931 >seq14 Length=171410997 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || || || | || || ||||| || ||||| || Sbjct 137735389 ATGCAGATTTTTGTGAAGACCCTTACGGGGAAAACCATCACGCTTGAGGTTGAACCCTCA 137735330 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || | || || || ||||| || || || ||||| Sbjct 137735329 GACACTATAGAAAATGTAAAGGCCAAGACCCAGGATAAGGAAGGAATTCCTCCTGATCAG 137735270 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || || || ||||||| || ||| | || || |||||| Sbjct 137735269 CAGAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATAGCCGGACTTTGTCTGACTACAAC 137735210 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||||||||| ||||| ||| |||| ||| | | | |||||| Sbjct 137735209 ATTCAAAAGGAGTCCACCTTTCATCTGGTATTGAGACTTCAGGGTGG 137735163 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || || || || ||||| || Sbjct 144150574 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAGCCCAGT 144150515 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || || || ||||| ||||| || || || || Sbjct 144150514 GACACCATTGAAAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGACCAG 144150455 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | |||||||| || | ||||| | || | || ||||||||| Sbjct 144150454 CAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACTCTCTCTGATTACAAC 144150395 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || || ||||||||| | || |||| | ||| || |||||||| Sbjct 144150394 ATCCAGAAAGAGTCGACCCTGCACCTGGTCCTCCGTCTGAGGGGTGGC 144150347 >seq25 Length=158037523 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || |||||||||||| | || || || || ||||| || Sbjct 45424654 CATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 45424595 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || | || || || || || || || ||||| ||||| || || || || Sbjct 45424594 TGACACCATCGCGAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGACCA 45424535 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | |||||||| || | ||||| | || | || |||||||| Sbjct 45424534 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACTCTCTCTGATTACAA 45424475 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||| || || ||||||||| | || |||| | ||| || |||||||| Sbjct 45424474 CATCCAGAAAGAGTCGACCCTGCACCTGGTCCTCCGTCTGAGGGGTGGC 45424426 >seq8 Length=97450195 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || || || | || || || || || ||||| || Sbjct 30033074 ATGCAGATCTTTGTGAAGACCCTTACAGGGAAAACCATCACGCTCGAGGTTGAACCCTCG 30033015 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || || || ||||| || || || ||||| Sbjct 30033014 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 30032955 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || || || ||||||| | ||| | || || |||||| Sbjct 30032954 CAGAGACTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGGACTTTGTCTGACTACAAC 30032895 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||||||||| ||| | ||| |||| ||| | | |||||||| Sbjct 30032894 ATTCAAAAGGAGTCCACCCTTCATCTGGTGTTGAGACTTCGGGGTGG 30032848 >seq19 Length=145277780 Score = 96.9 bits (106), Expect = 3e-15 Identities = 159/228 (70%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || | || || |||||| ||||| | || || || || ||||| || Sbjct 136502052 ATGCAGATCTTCCTGAAGACCCTGACCAGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 136501993 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || || || || || ||||| ||||| || || || || Sbjct 136501992 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCC-CCTGACCAG 136501934 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | ||| | || ||||||||| Sbjct 136501933 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGATTACAAC 136501874 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || |||||||||||| | || |||| | ||| || |||||||| Sbjct 136501873 ATCCAGAAGGAGTCGACCCTGCACCTGGTCCTCCGTCTGAGGGGTGGC 136501826 >seq22 Length=147524369 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || || || | || || || || || ||||| || Sbjct 124974467 ATGCAGATCTTTGTGAAGACCCTTACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCG 124974526 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || || || ||||| || || || ||||| Sbjct 124974527 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 124974586 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || || || ||||||| | ||| | || || |||||| Sbjct 124974587 CAGAGACTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGGACTTTGTCTGACTACAAC 124974646 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||||||||||| ||| | ||| |||| ||| | | |||||||| Sbjct 124974647 NTTCAAAAGGAGTCCACCCTTCATCTGGTGTTGAGACTTCGGGGTGG 124974693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434901209850240