Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq9 174 1e-38 seq1 122 7e-23 seq19 111 1e-19 >seq9 Length=92629107 Score = 174 bits (192), Expect = 1e-38 Identities = 180/236 (76%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 1290 ATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACTTTTAGTAAT 1349 ||||| |||||||| ||| ||||| ||||||||||||||||| ||| | || || Sbjct 42597361 ATTGTGACATGGCAGAAAAAGAAAGCCGTAAGCCCAGAAAACATGGTCACCTACAGCAAA 42597302 Query 1350 GACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACTGAGCTTGGA 1409 ||| |||||||| | ||||| || |||||||| | || ||| | || ||||| ||| Sbjct 42597301 ACCCATGGGGTTGTAATCCAGCCTGCCTACAAAGACAGGATAAACGTCACGGAGCTGGGA 42597242 Query 1410 CTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGGTGCTACAAG 1469 || ||| ||| || ||||||||||||||||||||||| ||||| || ||||||| | Sbjct 42597241 CTCTGGAACTCAAGCATCACCTTCTGGAACACAACATTGGAAGATGAGGGTTGCTACATG 42597182 Query 1470 TGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTAACCCT 1525 ||| | || ||||| ||||| ||| |||| | ||||||| || || || ||||| Sbjct 42597181 TGTCTCTTCAACACGTTTGGTTCTCAGAAGGTCTCAGGAACAGCTTGCCTTACCCT 42597126 >seq1 Length=185492789 Score = 122 bits (134), Expect = 7e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || || |||||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 99382370 GTGGTGGAGGAACTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 99382311 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| || | || | |||| || |||||| Sbjct 99382310 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACAGGGAGATGTCACCCCTGGTGGACAAC 99382251 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 99382250 ATCGCCCTGTGGATGACTGA 99382231 >seq19 Length=145277780 Score = 111 bits (122), Expect = 1e-19 Identities = 121/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || ||||| | || ||||||||||| || | || | |||||||| | || || || Sbjct 24628056 AGGCCTGTGATATGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAGGGC 24628115 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 |||||||||||||| ||| |||| |||||||| | |||||||| |||||||| || | Sbjct 24628116 ACACCCAGACCCATATCTCCTGACCTCTGGTAAAGCTGGCAAGATAGCTCCCCATTCACC 24628175 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 ||||| ||||||| | | || || |||||||| |||| Sbjct 24628176 ACATAGAACTGACAGAGGGCATGGCAAGGAGGCAGTGCCAT 24628216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414460827359368